RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 OR11H2Q8NH07 326 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 DCANP1Q8TF63 244 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 GLMPQ8WWB7 406 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 SLC35E1Q96K37 410 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 RARRES2Q99969 163 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 SRRQ9GZT4 340 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 C11orf68Q9H3H3 251 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 KLK5Q9Y337 293 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 TMED3Q9Y3Q3 217 aa4.97□□□□□ -1.61
CCDC88A-213ENST00000476903 NAP1L6A6NFF2 107 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 BUB3O43684 328 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 SPP1P10451 314 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 IAPPP10997 89 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 PSG1P11464 419 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 UBE2MP61081 183 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 SNRPD3P62318 126 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 RAB11AP62491 216 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 PPP1R1AQ13522 171 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 GAMTQ14353 236 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 ACTL10Q5JWF8 245 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 TRIQKQ629K1 86 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 OR8G2PQ6IF36 304 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 MORN3Q6PF18 240 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 SIGLEC15Q6ZMC9 328 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 TRPT1Q86TN4 253 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 OR51G1Q8NGK1 321 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 RNF125Q96EQ8 232 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 CIB3Q96Q77 187 aaPredicted RBP4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 SEPSECSQ9HD40 501 aaKnown RBP4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 NRN1Q9NPD7 142 aa4.96□□□□□ -1.62
CCDC88A-213ENST00000476903 IGKV1D-37A0A075B6S9 117 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 C5orf51A6NDU8 294 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 KNCNA6PVL3 124 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 CENPXA8MT69 81 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 SYNGR2O43760 224 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 NDUFB6O95139 128 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 HOXB5P09067 269 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 STAG3L3P0CL85 134 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 RAB14P61106 215 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 PSMG4Q5JS54 123 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 AKAP14Q86UN6 197 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 COQ8AQ8NI60 647 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 C11orf45Q8TAV5 145 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 PHLDA1Q8WV24 401 aaPredicted RBP4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 TRGV9Q99603 122 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 PBDC1Q9BVG4 233 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 MFFQ9GZY8 342 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 BATF3Q9NR55 127 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 FBXL17Q9UF56 701 aa4.95□□□□□ -1.62
CCDC88A-213ENST00000476903 C9orf170A2RU37 121 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 SNRPGP15A8MWD9 76 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 WRBO00258 174 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 LY6G6CO95867 125 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 CFDP00746 253 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 IFNA21P01568 189 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 GIG44P09565 113 aaPredicted RBP4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 MIFP14174 115 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 C4BPBP20851 252 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 RAP2BP61225 183 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 LYZP61626 148 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 NUTF2P61970 127 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 ZNF90Q03938 601 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 BAK1Q16611 211 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 SPANXN5Q5MJ07 72 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 C1orf194Q5T5A4 169 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 GGNBP1Q5YKI7 109 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 THAP8Q8NA92 274 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 RAB40CQ96S21 281 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 MAGT1Q9H0U3 335 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 ALMS1Q8TCU4 4167 aa4.94□□□□□ -1.62
CCDC88A-213ENST00000476903 PRSS46E5RG02 174 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 DEFB4AO15263 64 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 ADAP1O75689 374 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 OR4E1P0C645 316 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 S100A7P31151 101 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 ID1P41134 155 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 NKX2-1P43699 371 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 PCP4P48539 62 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 NANOS2P60321 138 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 POLR2GP62487 172 aaKnown RBP eCLIP4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 OR2F1Q13607 317 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 SAMD13Q5VXD3 122 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 Q8NAQ8 132 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 C7orf50Q9BRJ6 194 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 C1QTNF4Q9BXJ3 329 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 FLVCR2Q9UPI3 526 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 STRAPQ9Y3F4 350 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 DNAH1Q9P2D7 4330 aa4.93□□□□□ -1.62
CCDC88A-213ENST00000476903 IGKV1OR2-108A0A075B7D4 117 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 IGHV4-28A0A0C4DH34 117 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 ZNF705EA8MWA4 302 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 H3BMM0 161 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 H3BP45 60 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 SSSCA1O60232 199 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 IL7P13232 177 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 HLA-DRB4P13762 266 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 ANXA7P20073 488 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 BTCP35070 178 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 CAMLGP49069 296 aa4.92□□□□□ -1.62
CCDC88A-213ENST00000476903 PSMB3P49720 205 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms