RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 TRGV9Q99603 122 aa13.22□□□□□ -0.29
SHANK1-204ENST00000391814 OVOL1O14753 267 aa13.22□□□□□ -0.29
SHANK1-204ENST00000391814 FOXF2Q12947 444 aa13.21□□□□□ -0.29
SHANK1-204ENST00000391814 COL11A2P13942 1736 aaPredicted RBP13.21□□□□□ -0.29
SHANK1-204ENST00000391814 LINC01549A6NIU2 74 aa13.21□□□□□ -0.29
SHANK1-204ENST00000391814 B5MCH6 92 aa13.21□□□□□ -0.29
SHANK1-204ENST00000391814 COLCA1Q6ZS62 124 aa13.21□□□□□ -0.29
SHANK1-204ENST00000391814 LOC102723996A0A087X1L8 192 aa13.21□□□□□ -0.29
SHANK1-204ENST00000391814 PRR19A6NJB7 356 aa13.21□□□□□ -0.29
SHANK1-204ENST00000391814 RPL32P62910 135 aaKnown RBP13.21□□□□□ -0.29
SHANK1-204ENST00000391814 C1orf162Q8NEQ5 155 aaPredicted RBP13.21□□□□□ -0.3
SHANK1-204ENST00000391814 RCHY1Q96PM5 261 aa13.21□□□□□ -0.3
SHANK1-204ENST00000391814 RASL10AQ92737 203 aa13.21□□□□□ -0.3
SHANK1-204ENST00000391814 KNL1Q8NG31 2342 aa13.21□□□□□ -0.3
SHANK1-204ENST00000391814 Q6ZRM9 215 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 SLC25A16P16260 332 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 ZIC4Q8N9L1 334 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 WIPF3A6NGB9 483 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 MLANAQ16655 118 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 PRDM6Q9NQX0 595 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 UBR3Q6ZT12 1888 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 SMIM27A0A1W2PRY6 76 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 IGLC7A0M8Q6 106 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 VCYO14598 125 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 METRNQ9UJH8 293 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 LTBP4Q8N2S1 1624 aa13.2□□□□□ -0.3
SHANK1-204ENST00000391814 IGHV3-53P01767 116 aa13.19□□□□□ -0.3
SHANK1-204ENST00000391814 MORN5Q5VZ52 161 aa13.19□□□□□ -0.3
SHANK1-204ENST00000391814 PRADC1Q9BSG0 188 aa13.19□□□□□ -0.3
SHANK1-204ENST00000391814 TIMM23O14925 209 aa13.19□□□□□ -0.3
SHANK1-204ENST00000391814 SUMO4Q6EEV6 95 aa13.19□□□□□ -0.3
SHANK1-204ENST00000391814 LINC00527Q9UJ94 153 aa13.19□□□□□ -0.3
SHANK1-204ENST00000391814 V9GYV3 84 aa13.19□□□□□ -0.3
SHANK1-204ENST00000391814 TMEM126AQ9H061 195 aa13.19□□□□□ -0.3
SHANK1-204ENST00000391814 FLVCR1-AS1Q8TAF5 88 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 TRBV20-1A0A075B6N2 111 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 A0A087WWL8 130 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 FCN3O75636 299 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 CD177Q8N6Q3 437 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 PAX8Q06710 450 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 SP7Q8TDD2 431 aaPredicted RBP13.18□□□□□ -0.3
SHANK1-204ENST00000391814 GREB1Q4ZG55 1949 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 C17orf100A8MU93 164 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 NDPQ00604 133 aa13.18□□□□□ -0.3
SHANK1-204ENST00000391814 HAPLN4Q86UW8 402 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 C9orf106Q8NAJ2 232 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 IGHV1-18A0A0C4DH31 117 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 PSPNO60542 156 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 ZNF114Q8NC26 417 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 C7orf69Q9H7B7 122 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 ASXL3Q9C0F0 2248 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 DUSP14O95147 198 aaKnown RBP13.17□□□□□ -0.3
SHANK1-204ENST00000391814 FGF6P10767 208 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 C20orf204Q6ZNR8 217 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 ZCCHC24Q8N2G6 241 aaKnown RBP13.17□□□□□ -0.3
SHANK1-204ENST00000391814 PMVKQ15126 192 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 FDCSPQ8NFU4 85 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 TDRD6O60522 2096 aaKnown RBP13.17□□□□□ -0.3
SHANK1-204ENST00000391814 VWC2Q2TAL6 325 aa13.17□□□□□ -0.3
SHANK1-204ENST00000391814 PLXNA1Q9UIW2 1896 aa13.16□□□□□ -0.3
SHANK1-204ENST00000391814 DNAJC30Q96LL9 226 aa13.16□□□□□ -0.3
SHANK1-204ENST00000391814 ANXA2RQ3ZCQ2 193 aa13.16□□□□□ -0.3
SHANK1-204ENST00000391814 PEMTQ9UBM1 199 aa13.16□□□□□ -0.3
SHANK1-204ENST00000391814 HEATR5BQ9P2D3 2071 aa13.16□□□□□ -0.3
SHANK1-204ENST00000391814 KLHDC3Q9BQ90 382 aa13.16□□□□□ -0.3
SHANK1-204ENST00000391814 TRAV26-2A0A0B4J265 109 aa13.16□□□□□ -0.3
SHANK1-204ENST00000391814 AMTNQ6UX39 209 aa13.16□□□□□ -0.3
SHANK1-204ENST00000391814 PINLYPA6NC86 204 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 Q6P435 159 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 PSCAO43653 123 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 EFNA2O43921 213 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 F8WEM9 126 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 SOCS3O14543 225 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 PRB1P04280 392 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 TMEM200BQ69YZ2 307 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 SAP30O75446 220 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 VDAC2P45880 294 aaPredicted RBP13.15□□□□□ -0.3
SHANK1-204ENST00000391814 TMEM75Q8N9X5 138 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 TPRP12270 2363 aaKnown RBP13.15□□□□□ -0.3
SHANK1-204ENST00000391814 H0YJW9 148 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 YPEL3P61236 119 aaPredicted RBP13.15□□□□□ -0.3
SHANK1-204ENST00000391814 GAGE5Q13069 117 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 GAGE6Q13070 117 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 TP53TG1Q9Y2A0 90 aa13.15□□□□□ -0.3
SHANK1-204ENST00000391814 MRPS18CQ9Y3D5 142 aaKnown RBP13.15□□□□□ -0.3
SHANK1-204ENST00000391814 GAGE12JA6NER3 117 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 MMP23AO75900 390 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 GAGE7O76087 117 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 GAGE12FP0CL80 117 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 GAGE12GP0CL81 117 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 GAGE12IP0CL82 117 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 GAGE4Q13068 117 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 A0A1W2PR77 199 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 MRPL51Q4U2R6 128 aaKnown RBP13.14□□□□□ -0.31
SHANK1-204ENST00000391814 RNASE8Q8TDE3 154 aaKnown RBP13.14□□□□□ -0.31
SHANK1-204ENST00000391814 ZNF492Q9P255 531 aa13.14□□□□□ -0.31
SHANK1-204ENST00000391814 LYNX1G3V0Z9 82 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 LYNX1P0DP58 116 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 Q8N8P6 123 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 SSC4DQ8WTU2 575 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms