RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 FAM162BQ5T6X4 162 aa17.46■□□□□ 0.39
SHMT1-201ENST00000316694 MRPS16Q9Y3D3 137 aaKnown RBP17.46■□□□□ 0.39
SHMT1-201ENST00000316694 CEP295Q9C0D2 2601 aa17.46■□□□□ 0.39
SHMT1-201ENST00000316694 LRBAP50851 2863 aa17.45■□□□□ 0.38
SHMT1-201ENST00000316694 RBM14Q96PK6 669 aaKnown RBP17.45■□□□□ 0.38
SHMT1-201ENST00000316694 ASCL2Q99929 193 aa17.45■□□□□ 0.38
SHMT1-201ENST00000316694 OR4C46A6NHA9 309 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 I3L2K1 104 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 IGLV2-11P01706 119 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 ZNF138P52744 262 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 LOC102724200A0A096LPH7 203 aaPredicted RBP17.44■□□□□ 0.38
SHMT1-201ENST00000316694 C20orf202A1L168 122 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 TCF21O43680 179 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 LEPROTL1O95214 131 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 CNIH1O95406 144 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 Q6ZVH6 145 aa17.44■□□□□ 0.38
SHMT1-201ENST00000316694 CHCHD1Q96BP2 118 aaKnown RBP17.44■□□□□ 0.38
SHMT1-201ENST00000316694 NPIPB6E9PJ23 425 aa17.43■□□□□ 0.38
SHMT1-201ENST00000316694 TMEM14CQ9P0S9 112 aa17.43■□□□□ 0.38
SHMT1-201ENST00000316694 TP73-AS1Q9UF72 201 aa17.43■□□□□ 0.38
SHMT1-201ENST00000316694 TLN1Q9Y490 2541 aaKnown RBP17.43■□□□□ 0.38
SHMT1-201ENST00000316694 APOBEC3AP31941 199 aaPredicted RBP17.43■□□□□ 0.38
SHMT1-201ENST00000316694 PAX2Q02962 417 aa17.43■□□□□ 0.38
SHMT1-201ENST00000316694 RBPJQ06330 500 aa17.43■□□□□ 0.38
SHMT1-201ENST00000316694 C17orf77Q96MU5 243 aa17.43■□□□□ 0.38
SHMT1-201ENST00000316694 PPIAL4CA0A0B4J2A2 164 aa17.42■□□□□ 0.38
SHMT1-201ENST00000316694 IGKV1-17P01599 117 aa17.42■□□□□ 0.38
SHMT1-201ENST00000316694 PPIAL4GP0DN37 164 aa17.42■□□□□ 0.38
SHMT1-201ENST00000316694 UNQ5815/PRO19632Q6UWF5 114 aa17.42■□□□□ 0.38
SHMT1-201ENST00000316694 SYS1-DBNDD2H3BUS1 97 aa17.42■□□□□ 0.38
SHMT1-201ENST00000316694 TIMM8BQ9Y5J9 83 aaPredicted RBP17.42■□□□□ 0.38
SHMT1-201ENST00000316694 FAM231BA6NCW3 169 aa17.41■□□□□ 0.38
SHMT1-201ENST00000316694 DCHS2Q6V1P9 2916 aa17.41■□□□□ 0.38
SHMT1-201ENST00000316694 CSN3P07498 182 aa17.41■□□□□ 0.38
SHMT1-201ENST00000316694 OR4F17Q8NGA8 305 aa17.41■□□□□ 0.38
SHMT1-201ENST00000316694 ZC2HC1AQ96GY0 325 aa17.41■□□□□ 0.38
SHMT1-201ENST00000316694 NDFIP1Q9BT67 221 aa17.41■□□□□ 0.38
SHMT1-201ENST00000316694 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.4■□□□□ 0.38
SHMT1-201ENST00000316694 B9A039 149 aa17.4■□□□□ 0.38
SHMT1-201ENST00000316694 H0Y8G0 127 aa17.4■□□□□ 0.38
SHMT1-201ENST00000316694 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.4■□□□□ 0.38
SHMT1-201ENST00000316694 hDV102S1A0JD36 115 aa17.4■□□□□ 0.38
SHMT1-201ENST00000316694 HAX1O00165 279 aa17.4■□□□□ 0.38
SHMT1-201ENST00000316694 CRXO43186 299 aaPredicted RBP17.4■□□□□ 0.38
SHMT1-201ENST00000316694 CD3EP07766 207 aa17.4■□□□□ 0.38
SHMT1-201ENST00000316694 HTR1DP28221 377 aa17.4■□□□□ 0.38
SHMT1-201ENST00000316694 SCNM1Q9BWG6 230 aa17.4■□□□□ 0.38
SHMT1-201ENST00000316694 ONECUT1Q9UBC0 465 aa17.4■□□□□ 0.38
SHMT1-201ENST00000316694 APOHP02749 345 aaPredicted RBP17.39■□□□□ 0.37
SHMT1-201ENST00000316694 BPIFA4PQ86YQ2 179 aa17.39■□□□□ 0.37
SHMT1-201ENST00000316694 S4R3C0 116 aa17.39■□□□□ 0.37
SHMT1-201ENST00000316694 TRBV19A0A075B6N1 114 aa17.39■□□□□ 0.37
SHMT1-201ENST00000316694 IGFBPL1Q8WX77 278 aa17.39■□□□□ 0.37
SHMT1-201ENST00000316694 MCRIP2Q9BUT9 160 aaKnown RBP17.39■□□□□ 0.37
SHMT1-201ENST00000316694 TIMM23O14925 209 aa17.38■□□□□ 0.37
SHMT1-201ENST00000316694 SHANK2-AS3Q9BTD1 123 aa17.38■□□□□ 0.37
SHMT1-201ENST00000316694 TPPP3Q9BW30 176 aa17.38■□□□□ 0.37
SHMT1-201ENST00000316694 ZNF785A8K8V0 405 aa17.38■□□□□ 0.37
SHMT1-201ENST00000316694 K7EIM0 57 aa17.38■□□□□ 0.37
SHMT1-201ENST00000316694 ARMS2P0C7Q2 107 aa17.38■□□□□ 0.37
SHMT1-201ENST00000316694 HOXB4P17483 251 aaPredicted RBP17.38■□□□□ 0.37
SHMT1-201ENST00000316694 ORAOV1Q8WV07 137 aa17.38■□□□□ 0.37
SHMT1-201ENST00000316694 A0A1B0GUT8 65 aa17.37■□□□□ 0.37
SHMT1-201ENST00000316694 LIPFP07098 398 aa17.37■□□□□ 0.37
SHMT1-201ENST00000316694 MUC15Q8N387 334 aa17.37■□□□□ 0.37
SHMT1-201ENST00000316694 IL4P05112 153 aa17.37■□□□□ 0.37
SHMT1-201ENST00000316694 TMUB1Q9BVT8 246 aa17.37■□□□□ 0.37
SHMT1-201ENST00000316694 HLA-DRB1P01911 266 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 KLF17Q5JT82 389 aaPredicted RBP17.36■□□□□ 0.37
SHMT1-201ENST00000316694 LDLRAD2Q5SZI1 272 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 ST20Q9HBF5 79 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 HILPDAQ9Y5L2 63 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 H3BRN7 92 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 PTTG1IPP53801 180 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 C16orf54Q6UWD8 224 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 SIGLEC15Q6ZMC9 328 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 TMEM75Q8N9X5 138 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 LINC01560Q8TB33 94 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 MAP1LC3CQ9BXW4 147 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 PSG8Q9UQ74 426 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 COX11Q9Y6N1 276 aa17.36■□□□□ 0.37
SHMT1-201ENST00000316694 ABCA4P78363 2273 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 ARHGAP32A7KAX9 2087 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 K7EQM0 130 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 RNF125Q96EQ8 232 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 TMEM191AQ9H0A3 160 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 C1RLQ9NZP8 487 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 CSMD1Q96PZ7 3565 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 LY6LH3BQJ8 138 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 OVOL3O00110 214 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 FCGR2BP31994 310 aaPredicted RBP17.35■□□□□ 0.37
SHMT1-201ENST00000316694 NBL1P41271 181 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 ZNF491Q8N8L2 437 aa17.35■□□□□ 0.37
SHMT1-201ENST00000316694 M0R3E3 92 aa17.34■□□□□ 0.37
SHMT1-201ENST00000316694 CCL25O15444 150 aa17.34■□□□□ 0.37
SHMT1-201ENST00000316694 FOXC1Q12948 553 aa17.34■□□□□ 0.37
SHMT1-201ENST00000316694 ZNF738Q8NE65 137 aa17.34■□□□□ 0.37
SHMT1-201ENST00000316694 PTPRQQ9UMZ3 2332 aa17.34■□□□□ 0.37
SHMT1-201ENST00000316694 OR5AL1P0C617 328 aa17.33■□□□□ 0.37
SHMT1-201ENST00000316694 RIGQ13278 110 aa17.33■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms