RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 D6R8Y8 96 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 ESDP10768 282 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 OR9G4Q8NGQ1 327 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 RAB1BQ9H0U4 201 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 V9GYV3 84 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 PRR14LQ5THK1 2151 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 NPIPB11E5RHQ5 1161 aa12.54□□□□□ -0.4
SHH-201ENST00000297261 LGALS3P17931 250 aaKnown RBP12.54□□□□□ -0.4
SHH-201ENST00000297261 RPL15P61313 204 aaKnown RBP12.54□□□□□ -0.4
SHH-201ENST00000297261 GTSCR1Q86UQ5 136 aa12.53□□□□□ -0.4
SHH-201ENST00000297261 F2RL2O00254 374 aa12.53□□□□□ -0.4
SHH-201ENST00000297261 SNCGO76070 127 aa12.53□□□□□ -0.4
SHH-201ENST00000297261 IGLV3-1P01715 115 aa12.53□□□□□ -0.4
SHH-201ENST00000297261 TMEM30BQ3MIR4 351 aa12.53□□□□□ -0.4
SHH-201ENST00000297261 SLC25A15Q9Y619 301 aa12.53□□□□□ -0.4
SHH-201ENST00000297261 PLXNB1O43157 2135 aa12.53□□□□□ -0.4
SHH-201ENST00000297261 NUP210LQ5VU65 1888 aa12.53□□□□□ -0.4
SHH-201ENST00000297261 GAGE13Q4V321 117 aa12.52□□□□□ -0.4
SHH-201ENST00000297261 ASCL2Q99929 193 aa12.52□□□□□ -0.4
SHH-201ENST00000297261 PPIAL4CA0A0B4J2A2 164 aa12.52□□□□□ -0.4
SHH-201ENST00000297261 PPIAL4GP0DN37 164 aa12.52□□□□□ -0.4
SHH-201ENST00000297261 CD177Q8N6Q3 437 aa12.52□□□□□ -0.4
SHH-201ENST00000297261 MBNL3Q9NUK0 354 aaKnown RBP12.52□□□□□ -0.4
SHH-201ENST00000297261 NPIPB5A8MRT5 1133 aa12.52□□□□□ -0.41
SHH-201ENST00000297261 DPM2O94777 84 aa12.52□□□□□ -0.41
SHH-201ENST00000297261 TCRAP04437 139 aa12.52□□□□□ -0.41
SHH-201ENST00000297261 PAX2Q02962 417 aa12.52□□□□□ -0.41
SHH-201ENST00000297261 ZNF474Q6S9Z5 364 aaPredicted RBP12.52□□□□□ -0.41
SHH-201ENST00000297261 SLC25A48Q6ZT89 311 aaKnown RBP12.52□□□□□ -0.41
SHH-201ENST00000297261 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.52□□□□□ -0.41
SHH-201ENST00000297261 FAM74A4Q5TZK3 123 aa12.52□□□□□ -0.41
SHH-201ENST00000297261 PMS2P5A8MQ11 134 aa12.51□□□□□ -0.41
SHH-201ENST00000297261 TM4SF5O14894 197 aa12.51□□□□□ -0.41
SHH-201ENST00000297261 CCDC144NLQ6NUI1 221 aa12.51□□□□□ -0.41
SHH-201ENST00000297261 IGFL3Q6UXB1 125 aa12.51□□□□□ -0.41
SHH-201ENST00000297261 OR10J6PQ8NGY7 276 aa12.51□□□□□ -0.41
SHH-201ENST00000297261 GGTLC3B5MD39 225 aa12.51□□□□□ -0.41
SHH-201ENST00000297261 ERVK11-1P61568 191 aa12.51□□□□□ -0.41
SHH-201ENST00000297261 PSG3Q16557 428 aa12.51□□□□□ -0.41
SHH-201ENST00000297261 IGKV3-15P01624 115 aa12.5□□□□□ -0.41
SHH-201ENST00000297261 NPPCP23582 126 aa12.5□□□□□ -0.41
SHH-201ENST00000297261 METTL26Q96S19 204 aa12.5□□□□□ -0.41
SHH-201ENST00000297261 SRRM5B3KS81 715 aa12.5□□□□□ -0.41
SHH-201ENST00000297261 PSMG4Q5JS54 123 aa12.5□□□□□ -0.41
SHH-201ENST00000297261 JMJD8Q96S16 334 aa12.5□□□□□ -0.41
SHH-201ENST00000297261 LINC00312Q9Y6C7 94 aa12.5□□□□□ -0.41
SHH-201ENST00000297261 TRAV8-2A0A0B4J237 113 aa12.5□□□□□ -0.41
SHH-201ENST00000297261 IGHV2-26A0A0B4J1V2 119 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 IGKCP01834 107 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 SPG11Q96JI7 2443 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 K7EM74 188 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 MLNRO43193 412 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 IGKV1-16P04430 117 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 VWC2Q2TAL6 325 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 A0A0G2JNJ9 132 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 CKS1BP61024 79 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 PRR30Q53SZ7 412 aaPredicted RBP12.49□□□□□ -0.41
SHH-201ENST00000297261 Q9UFV3 132 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 EML5Q05BV3 1969 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.49□□□□□ -0.41
SHH-201ENST00000297261 PDLIM4P50479 330 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 RNF125Q96EQ8 232 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 UBTD1Q9HAC8 227 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 RPUSD1Q9UJJ7 312 aaKnown RBP12.49□□□□□ -0.41
SHH-201ENST00000297261 MSRB2Q9Y3D2 182 aa12.49□□□□□ -0.41
SHH-201ENST00000297261 IFI27P40305 119 aaPredicted RBP12.48□□□□□ -0.41
SHH-201ENST00000297261 LYZL1Q6UWQ5 148 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 FAM90A1Q86YD7 464 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 FABP5P3A8MUU1 101 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 K7EN84 100 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 K7EP13 123 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 ZC2HC1BQ5TFG8 222 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 KIR2DL4Q99706 377 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 ANAPC13Q9BS18 74 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 C21orf62Q9NYP8 219 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 LOC105371242A0A075B767 164 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 WISP2O76076 250 aa12.48□□□□□ -0.41
SHH-201ENST00000297261 SMKR1H3BMG3 65 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 IGFL2Q6UWQ7 119 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 PPP1R27Q86WC6 154 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 AMN1Q8IY45 258 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 NXT2Q9NPJ8 142 aaKnown RBP12.47□□□□□ -0.41
SHH-201ENST00000297261 ARMS2P0C7Q2 107 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 ADAMTSL5Q6ZMM2 481 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 C8orf46Q8TAG6 207 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 K7ENP7 123 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 HOXA3O43365 443 aaPredicted RBP12.47□□□□□ -0.41
SHH-201ENST00000297261 CRXO43186 299 aaPredicted RBP12.47□□□□□ -0.41
SHH-201ENST00000297261 LY6DQ14210 128 aa12.47□□□□□ -0.41
SHH-201ENST00000297261 SSC4DQ8WTU2 575 aa12.46□□□□□ -0.41
SHH-201ENST00000297261 CYSLTR1Q9Y271 337 aa12.46□□□□□ -0.41
SHH-201ENST00000297261 DYSFO75923 2080 aa12.46□□□□□ -0.41
SHH-201ENST00000297261 C17orf100A8MU93 164 aa12.46□□□□□ -0.41
SHH-201ENST00000297261 RNASE2P10153 161 aaKnown RBP12.46□□□□□ -0.41
SHH-201ENST00000297261 MEF2CQ06413 473 aaPredicted RBP12.46□□□□□ -0.41
SHH-201ENST00000297261 IGF2-ASQ6U949 168 aa12.46□□□□□ -0.41
SHH-201ENST00000297261 TEX29Q8N6K0 151 aa12.46□□□□□ -0.41
SHH-201ENST00000297261 ZNRD1Q9P1U0 126 aa12.46□□□□□ -0.41
SHH-201ENST00000297261 ETDBQ3ZM63 59 aa12.46□□□□□ -0.42
SHH-201ENST00000297261 SMAD7O15105 426 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms