RNA–Protein interactions for RNA: YBL103C

RTG3, Transcript of bHLH/Zip transcription factor for retrograde (RTG) and TOR pathways, yeast

Gene RTG3, Length 1,461 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RTG3	YBL103C	LRO1	P40345	661 aa		5.34	□□□□□ -1.55
RTG3	YBL103C	BNA3	P47039	444 aa	Known RBP	5.34	□□□□□ -1.55
RTG3	YBL103C	RNR4	P49723	345 aa	Known RBP	5.34	□□□□□ -1.55
RTG3	YBL103C	RPS15	Q01855	142 aa	Known RBP	5.34	□□□□□ -1.55
RTG3	YBL103C	COQ6	P53318	479 aa		5.33	□□□□□ -1.56
RTG3	YBL103C	ICT1	Q12385	394 aa		5.33	□□□□□ -1.56
RTG3	YBL103C	RPL7A	P05737	244 aa	Known RBP	5.32	□□□□□ -1.56
RTG3	YBL103C	PTP1	P25044	335 aa		5.32	□□□□□ -1.56
RTG3	YBL103C	CAP1	P28495	268 aa	Known RBP	5.32	□□□□□ -1.56
RTG3	YBL103C	YPR027C	Q12079	277 aa		5.32	□□□□□ -1.56
RTG3	YBL103C	RPL7B	Q12213	244 aa	Known RBP	5.32	□□□□□ -1.56
RTG3	YBL103C	MBR1	P23493	339 aa		5.32	□□□□□ -1.56
RTG3	YBL103C	GPP2	P40106	250 aa	Known RBP	5.32	□□□□□ -1.56
RTG3	YBL103C	GLO1	P50107	326 aa		5.32	□□□□□ -1.56
RTG3	YBL103C	SQS1	P53866	767 aa	Known RBP	5.32	□□□□□ -1.56
RTG3	YBL103C	YAP7	Q08182	245 aa		5.32	□□□□□ -1.56
RTG3	YBL103C	RMP1	Q12530	201 aa		5.32	□□□□□ -1.56
RTG3	YBL103C	WHI2	P12611	486 aa		5.31	□□□□□ -1.56
RTG3	YBL103C	SKY1	Q03656	742 aa		5.31	□□□□□ -1.56
RTG3	YBL103C	HEM1	P09950	548 aa	Predicted RBP	5.3	□□□□□ -1.56
RTG3	YBL103C	TMT1	P32643	299 aa		5.3	□□□□□ -1.56
RTG3	YBL103C	YJL193W	P39542	402 aa		5.3	□□□□□ -1.56
RTG3	YBL103C	LTP1	P40347	161 aa		5.3	□□□□□ -1.56
RTG3	YBL103C	DUG1	P43616	481 aa	Known RBP	5.3	□□□□□ -1.56
RTG3	YBL103C	NET1	P47035	1189 aa		5.3	□□□□□ -1.56
RTG3	YBL103C	TGS1	Q12052	315 aa		5.3	□□□□□ -1.56
RTG3	YBL103C	SEC3	P33332	1336 aa	Known RBP	5.3	□□□□□ -1.56
RTG3	YBL103C	AQY1	P0CD91	305 aa		5.29	□□□□□ -1.56
RTG3	YBL103C	VPS33	P20795	691 aa		5.29	□□□□□ -1.56
RTG3	YBL103C	RNR3	P21672	869 aa	Known RBP	5.29	□□□□□ -1.56
RTG3	YBL103C	UBP12	P39538	1254 aa		5.29	□□□□□ -1.56
RTG3	YBL103C	USA1	Q03714	838 aa		5.29	□□□□□ -1.56
RTG3	YBL103C	YEL076C-A	P0CX16	216 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	YLR464W	P0CX17	216 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	PCK1	P10963	549 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	EUG1	P32474	517 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	LOT5	P34234	306 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	CCL1	P37366	393 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	YPT10	P38146	199 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	YEL076C	P39971	216 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	YFL015C	P43578	164 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	ATG36	P46983	293 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	SAP4	P53036	818 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	PEF1	P53238	335 aa		5.28	□□□□□ -1.56
RTG3	YBL103C	TUF1	P02992	437 aa	Known RBP	5.27	□□□□□ -1.57
RTG3	YBL103C	BRN1	P38170	754 aa		5.27	□□□□□ -1.57
RTG3	YBL103C	SRP68	P38687	599 aa	Known RBP	5.27	□□□□□ -1.57
RTG3	YBL103C	PEA2	P40091	420 aa		5.27	□□□□□ -1.57
RTG3	YBL103C	IRC5	P43610	853 aa		5.27	□□□□□ -1.57
RTG3	YBL103C	YJL043W	P47053	257 aa		5.27	□□□□□ -1.57
RTG3	YBL103C	DOS2	P54858	310 aa		5.27	□□□□□ -1.57
RTG3	YBL103C	FRE7	Q12333	620 aa		5.27	□□□□□ -1.57
RTG3	YBL103C	RPC34	P32910	317 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	EXO1	P39875	702 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	YEN1	P40028	759 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	GAT1	P43574	510 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	NIT2	P47016	307 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	ATP23	P53722	227 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	GFD1	Q04839	188 aa	Known RBP	5.26	□□□□□ -1.57
RTG3	YBL103C	AEP2	P22136	580 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	SEC5	P89102	971 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	ORM2	Q06144	216 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	YOR378W	Q08902	515 aa		5.26	□□□□□ -1.57
RTG3	YBL103C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	5.26	□□□□□ -1.57	not detected
RTG3	YBL103C	MRPL9	P31334	269 aa		5.25	□□□□□ -1.57
RTG3	YBL103C	EAF5	P39995	279 aa		5.25	□□□□□ -1.57
RTG3	YBL103C	SPC105	P53148	917 aa		5.25	□□□□□ -1.57
RTG3	YBL103C	YGL081W	P53156	320 aa		5.25	□□□□□ -1.57
RTG3	YBL103C	CWC2	Q12046	339 aa	Predicted RBP	5.25	□□□□□ -1.57
RTG3	YBL103C	YMR084W	A2P2R3	262 aa		5.24	□□□□□ -1.57
RTG3	YBL103C	DSS4	P32601	143 aa		5.24	□□□□□ -1.57
RTG3	YBL103C	ULP2	P40537	1034 aa	Predicted RBP	5.24	□□□□□ -1.57
RTG3	YBL103C	MDR1	P53258	950 aa		5.24	□□□□□ -1.57
RTG3	YBL103C	WAR1	Q03631	944 aa		5.24	□□□□□ -1.57
RTG3	YBL103C	SEC12	P11655	471 aa		5.23	□□□□□ -1.57
RTG3	YBL103C	YPK1	P12688	680 aa	Known RBP	5.23	□□□□□ -1.57
RTG3	YBL103C	COX11	P19516	300 aa	Known RBP	5.23	□□□□□ -1.57
RTG3	YBL103C	BET2	P20133	325 aa		5.23	□□□□□ -1.57
RTG3	YBL103C	CWH43	P25618	953 aa		5.23	□□□□□ -1.57
RTG3	YBL103C	TRE2	Q08693	809 aa		5.23	□□□□□ -1.57
RTG3	YBL103C	PCL8	Q08966	492 aa		5.23	□□□□□ -1.57
RTG3	YBL103C	VPS5	Q92331	675 aa		5.23	□□□□□ -1.57
RTG3	YBL103C	BEM3	P32873	1128 aa		5.22	□□□□□ -1.57
RTG3	YBL103C	MNT2	P53059	558 aa		5.22	□□□□□ -1.57
RTG3	YBL103C	MTD1	Q02046	320 aa	Known RBP	5.22	□□□□□ -1.57
RTG3	YBL103C	ECM38	Q05902	660 aa	Predicted RBP	5.22	□□□□□ -1.57
RTG3	YBL103C	IRC3	Q06683	689 aa		5.22	□□□□□ -1.57
RTG3	YBL103C	STP1	Q00947	519 aa		5.21	□□□□□ -1.58
RTG3	YBL103C	RGT2	Q12300	763 aa		5.21	□□□□□ -1.58
RTG3	YBL103C	ARG1	P22768	420 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	GRX4	P32642	244 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	YBR071W	P38243	211 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	PSA1	P41940	361 aa	Known RBP	5.2	□□□□□ -1.58
RTG3	YBL103C	BST1	P43571	1029 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	YJR120W	P47157	116 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	SLD3	P53135	668 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	TMA17	Q12513	150 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	AAC1	P04710	309 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	APD1	P38281	316 aa		5.2	□□□□□ -1.58
RTG3	YBL103C	TDA10	P42938	290 aa		5.2	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 57 ms