RNA–Protein interactions for RNA: ENST00000610462.1

CSPG5-205, Transcript of chondroitin sulfate proteoglycan 5, human

TSL 5 BASIC

Gene CSPG5, Length 2,073 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSPG5-205	ENST00000610462	KRT23	Q9C075	422 aa		32.79	■■■□□ 2.84
CSPG5-205	ENST00000610462	MAP3K11	Q16584	847 aa		32.79	■■■□□ 2.84
CSPG5-205	ENST00000610462	ILDR1	Q86SU0	546 aa	Predicted RBP	32.79	■■■□□ 2.84
CSPG5-205	ENST00000610462	SGMS1	Q86VZ5	419 aa		32.79	■■■□□ 2.84
CSPG5-205	ENST00000610462	RGS22	Q8NE09	1264 aa		32.79	■■■□□ 2.84
CSPG5-205	ENST00000610462	INCENP	Q9NQS7	918 aa		32.79	■■■□□ 2.84
CSPG5-205	ENST00000610462	RAI14	Q9P0K7	980 aa		32.79	■■■□□ 2.84
CSPG5-205	ENST00000610462	METAP2	P50579	478 aa	Known RBP eCLIP	32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	APOA5	Q6Q788	366 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	LY9	Q9HBG7	655 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	TACC3	Q9Y6A5	838 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	MFSD6	Q6ZSS7	791 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	FBXO33	Q7Z6M2	555 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	FBXO18	Q8NFZ0	1043 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	STAG1	Q8WVM7	1258 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	USP28	Q96RU2	1077 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	ZSWIM5	Q9P217	1185 aa		32.78	■■■□□ 2.84
CSPG5-205	ENST00000610462	TMEM67	Q5HYA8	995 aa		32.77	■■■□□ 2.84
CSPG5-205	ENST00000610462	ADGRA1	Q86SQ6	560 aa		32.77	■■■□□ 2.84
CSPG5-205	ENST00000610462	ANKRD2	Q9GZV1	360 aa		32.77	■■■□□ 2.84
CSPG5-205	ENST00000610462	SEMA3E	O15041	775 aa		32.76	■■■□□ 2.84
CSPG5-205	ENST00000610462	CCDC192	P0DO97	292 aa		32.76	■■■□□ 2.84
CSPG5-205	ENST00000610462	LIFR	P42702	1097 aa		32.76	■■■□□ 2.84
CSPG5-205	ENST00000610462	CEBPZ	Q03701	1054 aa	Known RBP	32.76	■■■□□ 2.84
CSPG5-205	ENST00000610462	CLSTN2	Q9H4D0	955 aa		32.76	■■■□□ 2.84
CSPG5-205	ENST00000610462	SENP2	Q9HC62	589 aa		32.76	■■■□□ 2.84
CSPG5-205	ENST00000610462	MAGEB6P1	A0A0J9YX57	407 aa		32.76	■■■□□ 2.83
CSPG5-205	ENST00000610462	ONECUT3	O60422	494 aa	Predicted RBP	32.76	■■■□□ 2.83
CSPG5-205	ENST00000610462	KDM4A	O75164	1064 aa		32.76	■■■□□ 2.83
CSPG5-205	ENST00000610462	CDKL5	O76039	1030 aa		32.75	■■■□□ 2.83
CSPG5-205	ENST00000610462	TNMD	Q9H2S6	317 aa		32.75	■■■□□ 2.83
CSPG5-205	ENST00000610462	ANO8	Q9HCE9	1232 aa	Predicted RBP	32.75	■■■□□ 2.83
CSPG5-205	ENST00000610462	AFF2	P51816	1311 aa		32.75	■■■□□ 2.83
CSPG5-205	ENST00000610462	ZBTB43	O43298	467 aa		32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	NFXL1	Q6ZNB6	911 aa		32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	ZSCAN30	Q86W11	494 aa		32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	FTO	Q9C0B1	505 aa	Known RBP eCLIP	32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	NR1I2	O75469	434 aa		32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	RFC4	P35249	363 aa		32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	CAMK4	Q16566	473 aa		32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	TRAPPC3L	Q5T215	181 aa		32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	OTUD7B	Q6GQQ9	843 aa		32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	TNRC6C	Q9HCJ0	1690 aa	Known RBP	32.74	■■■□□ 2.83
CSPG5-205	ENST00000610462	ECM29	Q5VYK3	1845 aa		32.73	■■■□□ 2.83
CSPG5-205	ENST00000610462	IFIT3	O14879	490 aa	Known RBP	32.73	■■■□□ 2.83
CSPG5-205	ENST00000610462	CPLX2	Q6PUV4	134 aa	Known RBP	32.73	■■■□□ 2.83
CSPG5-205	ENST00000610462	RBM43	Q6ZSC3	357 aa	Known RBP	32.73	■■■□□ 2.83
CSPG5-205	ENST00000610462	CCDC24	Q8N4L8	307 aa		32.73	■■■□□ 2.83
CSPG5-205	ENST00000610462	PDS5A	Q29RF7	1337 aa	Known RBP	32.73	■■■□□ 2.83
CSPG5-205	ENST00000610462	TM4SF1	P30408	202 aa		32.73	■■■□□ 2.83
CSPG5-205	ENST00000610462	RIOK1	Q9BRS2	568 aa	Known RBP	32.72	■■■□□ 2.83
CSPG5-205	ENST00000610462	RNF41	Q9H4P4	317 aa	Predicted RBP	32.72	■■■□□ 2.83
CSPG5-205	ENST00000610462	CDC27	P30260	824 aa		32.71	■■■□□ 2.83
CSPG5-205	ENST00000610462	MICU3	Q86XE3	530 aa		32.71	■■■□□ 2.83
CSPG5-205	ENST00000610462	BRAP	Q7Z569	592 aa		32.71	■■■□□ 2.83
CSPG5-205	ENST00000610462	MTA3	Q9BTC8	594 aa		32.71	■■■□□ 2.83
CSPG5-205	ENST00000610462	RTEL1	Q9NZ71	1219 aa		32.71	■■■□□ 2.83
CSPG5-205	ENST00000610462	GOLGA8A	A7E2F4	631 aa		32.7	■■■□□ 2.83
CSPG5-205	ENST00000610462	RXRA	P19793	462 aa		32.7	■■■□□ 2.83
CSPG5-205	ENST00000610462	KLRK1	P26718	216 aa		32.7	■■■□□ 2.83
CSPG5-205	ENST00000610462	PPARA	Q07869	468 aa		32.7	■■■□□ 2.83
CSPG5-205	ENST00000610462	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	32.7	■■■□□ 2.83
CSPG5-205	ENST00000610462	FAM196A	Q6ZSG2	479 aa		32.7	■■■□□ 2.82
CSPG5-205	ENST00000610462	ANAPC4	Q9UJX5	808 aa		32.7	■■■□□ 2.82
CSPG5-205	ENST00000610462	SLC12A7	Q9Y666	1083 aa		32.7	■■■□□ 2.82
CSPG5-205	ENST00000610462	CCDC69	A6NI79	296 aa		32.69	■■■□□ 2.82
CSPG5-205	ENST00000610462	HIBADH	P31937	336 aa	Known RBP	32.69	■■■□□ 2.82
CSPG5-205	ENST00000610462	RRP12	Q5JTH9	1297 aa	Known RBP	32.69	■■■□□ 2.82
CSPG5-205	ENST00000610462	SEPT12	Q8IYM1	358 aa		32.69	■■■□□ 2.82
CSPG5-205	ENST00000610462	SDR42E1	Q8WUS8	393 aa		32.69	■■■□□ 2.82
CSPG5-205	ENST00000610462	NID2	Q14112	1375 aa		32.69	■■■□□ 2.82
CSPG5-205	ENST00000610462	NTRK3	Q16288	839 aa		32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	CCDC39	Q9UFE4	941 aa		32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	TRPC5	Q9UL62	973 aa	Predicted RBP	32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	TYRO3	Q06418	890 aa		32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	SART3	Q15020	963 aa	Known RBP	32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	CCAR1	Q8IX12	1150 aa	Known RBP	32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	ALG1	Q9BT22	464 aa		32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	BCL11B	Q9C0K0	894 aa	Predicted RBP	32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	TOMM22	Q9NS69	142 aa		32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	FAM217B	Q9NTX9	383 aa	Predicted RBP	32.68	■■■□□ 2.82
CSPG5-205	ENST00000610462	NPHP1	O15259	732 aa		32.67	■■■□□ 2.82
CSPG5-205	ENST00000610462	CKAP2L	Q8IYA6	745 aa		32.67	■■■□□ 2.82
CSPG5-205	ENST00000610462	GJB4	Q9NTQ9	266 aa		32.67	■■■□□ 2.82
CSPG5-205	ENST00000610462	KIF23	Q02241	960 aa	Predicted RBP	32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	SYNE3	Q6ZMZ3	975 aa		32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	ZNF384	Q8TF68	577 aa		32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	USP25	Q9UHP3	1055 aa		32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	MRVI1	Q9Y6F6	885 aa		32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	BAZ2A	Q9UIF9	1905 aa	Known RBP	32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	CCDC144CP	Q8IYA2	1237 aa		32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	TFCP2L1	Q9NZI6	479 aa		32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	NOL7	Q9UMY1	257 aa	Known RBP	32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	MAST2	Q6P0Q8	1798 aa		32.66	■■■□□ 2.82
CSPG5-205	ENST00000610462	CCDC88A	Q3V6T2	1871 aa		32.65	■■■□□ 2.82
CSPG5-205	ENST00000610462	IARS	P41252	1262 aa	Known RBP	32.65	■■■□□ 2.82
CSPG5-205	ENST00000610462	DYNLL1	P63167	89 aa	Known RBP	32.65	■■■□□ 2.82
CSPG5-205	ENST00000610462	NFIX	Q14938	502 aa		32.65	■■■□□ 2.82
CSPG5-205	ENST00000610462	MYSM1	Q5VVJ2	828 aa		32.65	■■■□□ 2.82
CSPG5-205	ENST00000610462	MYL10	Q9BUA6	226 aa		32.65	■■■□□ 2.82

Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms