RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 WASHC4Q2M389 1173 aa13.91□□□□□ -0.18
LIG1-207ENST00000594759 ANKS4BQ8N8V4 417 aa13.91□□□□□ -0.18
LIG1-207ENST00000594759 IL13P35225 146 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 IFFO1Q0D2I5 559 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 ARMCX5Q6P1M9 558 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 IGSF22Q8N9C0 903 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.9□□□□□ -0.18
LIG1-207ENST00000594759 ANKRD18BA2A2Z9 1011 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 H3BQF6 201 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 USO1O60763 962 aaKnown RBP13.9□□□□□ -0.18
LIG1-207ENST00000594759 N4BP1O75113 896 aaKnown RBP13.9□□□□□ -0.18
LIG1-207ENST00000594759 SASH3O75995 380 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 IQCB1Q15051 598 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 CCDC40Q4G0X9 1142 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 ANKRD24Q8TF21 1146 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 CARD10Q9BWT7 1032 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 RAB11FIP4Q86YS3 637 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 SPDL1Q96EA4 605 aa13.9□□□□□ -0.18
LIG1-207ENST00000594759 TMX4Q9H1E5 349 aaPredicted RBP13.9□□□□□ -0.18
LIG1-207ENST00000594759 PLXNC1O60486 1568 aa13.89□□□□□ -0.19
LIG1-207ENST00000594759 USP28Q96RU2 1077 aa13.89□□□□□ -0.19
LIG1-207ENST00000594759 PTPDC1A2A3K4 754 aa13.89□□□□□ -0.19
LIG1-207ENST00000594759 GOLGA8KD6RF30 607 aa13.89□□□□□ -0.19
LIG1-207ENST00000594759 GCFC2P16383 781 aaKnown RBP13.89□□□□□ -0.19
LIG1-207ENST00000594759 CNGA4Q8IV77 575 aa13.89□□□□□ -0.19
LIG1-207ENST00000594759 NAA15Q9BXJ9 866 aaKnown RBP13.89□□□□□ -0.19
LIG1-207ENST00000594759 PPANQ9NQ55 473 aaKnown RBP13.89□□□□□ -0.19
LIG1-207ENST00000594759 RPAP1Q9BWH6 1393 aaPredicted RBP13.89□□□□□ -0.19
LIG1-207ENST00000594759 SCRN1Q12765 414 aa13.89□□□□□ -0.19
LIG1-207ENST00000594759 IQUBQ8NA54 791 aa13.89□□□□□ -0.19
LIG1-207ENST00000594759 CCDC47Q96A33 483 aaKnown RBP13.89□□□□□ -0.19
LIG1-207ENST00000594759 ZSWIM6Q9HCJ5 1215 aa13.89□□□□□ -0.19
LIG1-207ENST00000594759 U3KPZ7 1027 aaPredicted RBP13.89□□□□□ -0.19
LIG1-207ENST00000594759 KRT86O43790 486 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 RPS6KB1P23443 525 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 SLC39A6Q13433 755 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 CTAGE1Q96RT6 745 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 LSG1Q9H089 658 aaKnown RBP13.88□□□□□ -0.19
LIG1-207ENST00000594759 MRFAP1Q9Y605 127 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 KDM5AP29375 1690 aaKnown RBP13.88□□□□□ -0.19
LIG1-207ENST00000594759 TMEM2Q9UHN6 1383 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 PI4KAP2A4QPH2 592 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 SLC27A2O14975 620 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 PPP1R7Q15435 360 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 PI4KAP1Q8N8J0 262 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 DDX17Q92841 729 aaKnown RBP13.88□□□□□ -0.19
LIG1-207ENST00000594759 WDR24Q96S15 920 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.88□□□□□ -0.19
LIG1-207ENST00000594759 CUTAO60888 179 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 CCDC122Q5T0U0 273 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 IFT81Q8WYA0 676 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 PGBD1Q96JS3 809 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 KLC4Q9NSK0 619 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 FANCLQ9NW38 375 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 NFE2L3Q9Y4A8 694 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 ZMYND10O75800 440 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 SF3B2Q13435 895 aaKnown RBP13.88□□□□□ -0.19
LIG1-207ENST00000594759 FAM227BQ96M60 508 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 HINFPQ9BQA5 517 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 FTOQ9C0B1 505 aaKnown RBP eCLIP13.88□□□□□ -0.19
LIG1-207ENST00000594759 PARP3Q9Y6F1 533 aa13.88□□□□□ -0.19
LIG1-207ENST00000594759 MAP3K9P80192 1104 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 KIF24Q5T7B8 1368 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 SLC35F6Q8N357 371 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 CFAP74Q9C0B2 1584 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 CCDC113Q9H0I3 377 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 E9PCH4 1651 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 TTC21AQ8NDW8 1320 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 SEC62Q99442 399 aaKnown RBP13.87□□□□□ -0.19
LIG1-207ENST00000594759 AKAP2Q9Y2D5 859 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 PDE6BP35913 854 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 ADALQ6DHV7 355 aa13.87□□□□□ -0.19
LIG1-207ENST00000594759 SUDS3Q9H7L9 328 aaPredicted RBP13.87□□□□□ -0.19
LIG1-207ENST00000594759 ATP1A3P13637 1013 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 PCK1P35558 622 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 KCNJ6P48051 423 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 LONRF3Q496Y0 759 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 KCTD16Q68DU8 428 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 STX17P56962 302 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 GIGYF2Q6Y7W6 1299 aaKnown RBP13.86□□□□□ -0.19
LIG1-207ENST00000594759 SUGCTQ9HAC7 445 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 SAR1BQ9Y6B6 198 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 SBNO2Q9Y2G9 1366 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 GCP02774 474 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 CD248Q9HCU0 757 aa13.86□□□□□ -0.19
LIG1-207ENST00000594759 PPP1R12BO60237 982 aaPredicted RBP13.85□□□□□ -0.19
LIG1-207ENST00000594759 SMIM24O75264 130 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 CLTAP09496 248 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 NEFHP12036 1026 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 ALS2CR12Q96Q35 445 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 LUC7LQ9NQ29 371 aaKnown RBP13.85□□□□□ -0.19
LIG1-207ENST00000594759 PA2G4Q9UQ80 394 aaKnown RBP13.85□□□□□ -0.19
LIG1-207ENST00000594759 AOX1Q06278 1338 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 CYLC1P35663 651 aaPredicted RBP13.85□□□□□ -0.19
LIG1-207ENST00000594759 VSNL1P62760 191 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 OTUD7BQ6GQQ9 843 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 CCDC129Q6ZRS4 1044 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 TAF4BQ92750 862 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 ENO4A6NNW6 628 aa13.85□□□□□ -0.19
LIG1-207ENST00000594759 MYO1FO00160 1098 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms