RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 BAG3O95817 575 aa36.43■■■■□ 3.42
CTCF-203ENST00000566078 ALX1Q15699 326 aa36.43■■■■□ 3.42
CTCF-203ENST00000566078 ADCK5Q3MIX3 580 aa36.43■■■■□ 3.42
CTCF-203ENST00000566078 TSGA10IPQ3SY00 556 aa36.43■■■■□ 3.42
CTCF-203ENST00000566078 SDR42E1Q8WUS8 393 aa36.43■■■■□ 3.42
CTCF-203ENST00000566078 JAKMIP1Q96N16 626 aaKnown RBP36.43■■■■□ 3.42
CTCF-203ENST00000566078 NACAP1Q9BZK3 213 aa36.43■■■■□ 3.42
CTCF-203ENST00000566078 GAKO14976 1311 aa36.43■■■■□ 3.42
CTCF-203ENST00000566078 TIAM2Q8IVF5 1701 aa36.43■■■■□ 3.42
CTCF-203ENST00000566078 IMMTQ16891 758 aaKnown RBP36.42■■■■□ 3.42
CTCF-203ENST00000566078 CRNKL1Q9BZJ0 848 aaKnown RBP36.42■■■■□ 3.42
CTCF-203ENST00000566078 NAPBQ9H115 298 aa36.42■■■■□ 3.42
CTCF-203ENST00000566078 BTDP43251 543 aa36.41■■■■□ 3.42
CTCF-203ENST00000566078 BECN1Q14457 450 aa36.41■■■■□ 3.42
CTCF-203ENST00000566078 FAM163AQ96GL9 167 aaPredicted RBP36.41■■■■□ 3.42
CTCF-203ENST00000566078 RAD17O75943 681 aa36.41■■■■□ 3.42
CTCF-203ENST00000566078 TDO2P48775 406 aa36.41■■■■□ 3.42
CTCF-203ENST00000566078 KIAA0825Q8IV33 1275 aa36.41■■■■□ 3.42
CTCF-203ENST00000566078 JDP2Q8WYK2 163 aa36.41■■■■□ 3.42
CTCF-203ENST00000566078 UPF3BQ9BZI7 483 aaKnown RBP36.41■■■■□ 3.42
CTCF-203ENST00000566078 MYH1P12882 1939 aa36.4■■■■□ 3.42
CTCF-203ENST00000566078 CASTP20810 708 aaKnown RBP36.4■■■■□ 3.42
CTCF-203ENST00000566078 SCNN1DP51172 638 aa36.4■■■■□ 3.42
CTCF-203ENST00000566078 PPP4CP60510 307 aa36.4■■■■□ 3.42
CTCF-203ENST00000566078 HAND2P61296 217 aa36.4■■■■□ 3.42
CTCF-203ENST00000566078 KRT32Q14532 448 aa36.4■■■■□ 3.42
CTCF-203ENST00000566078 DAGLAQ9Y4D2 1042 aa36.4■■■■□ 3.42
CTCF-203ENST00000566078 GPR75-ASB3A0A0A6YYF3 556 aa36.39■■■■□ 3.42
CTCF-203ENST00000566078 NEK4P51957 841 aa36.39■■■■□ 3.42
CTCF-203ENST00000566078 TM6SF1Q9BZW5 370 aa36.39■■■■□ 3.42
CTCF-203ENST00000566078 ST18O60284 1047 aa36.38■■■■□ 3.41
CTCF-203ENST00000566078 CERS3Q8IU89 383 aa36.38■■■■□ 3.41
CTCF-203ENST00000566078 SH3RF3Q8TEJ3 882 aaPredicted RBP36.38■■■■□ 3.41
CTCF-203ENST00000566078 SNX21Q969T3 373 aa36.38■■■■□ 3.41
CTCF-203ENST00000566078 DDX60LQ5H9U9 1706 aaKnown RBP36.38■■■■□ 3.41
CTCF-203ENST00000566078 PSMD14O00487 310 aa36.37■■■■□ 3.41
CTCF-203ENST00000566078 ZNF213O14771 459 aa36.37■■■■□ 3.41
CTCF-203ENST00000566078 HSCBQ8IWL3 235 aa36.37■■■■□ 3.41
CTCF-203ENST00000566078 TBC1D2Q9BYX2 928 aa36.37■■■■□ 3.41
CTCF-203ENST00000566078 MYO3BQ8WXR4 1341 aa36.37■■■■□ 3.41
CTCF-203ENST00000566078 CD2BP2O95400 341 aaKnown RBP36.37■■■■□ 3.41
CTCF-203ENST00000566078 PSMA5P28066 241 aa36.37■■■■□ 3.41
CTCF-203ENST00000566078 RSBN1LQ6PCB5 846 aaPredicted RBP36.37■■■■□ 3.41
CTCF-203ENST00000566078 TEKT1Q969V4 418 aa36.37■■■■□ 3.41
CTCF-203ENST00000566078 STOX1Q6ZVD7 989 aa36.36■■■■□ 3.41
CTCF-203ENST00000566078 PRELPP51888 382 aa36.35■■■■□ 3.41
CTCF-203ENST00000566078 ARHGAP27Q6ZUM4 889 aa36.35■■■■□ 3.41
CTCF-203ENST00000566078 VIL1P09327 827 aaKnown RBP36.34■■■■□ 3.41
CTCF-203ENST00000566078 HHIPL2Q6UWX4 724 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 ZSWIM6Q9HCJ5 1215 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 E7EWF7 191 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 CPA1P15085 419 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 PLCG2P16885 1265 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 CRKP46108 304 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 GIMAP6Q6P9H5 292 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 ATP8A2Q9NTI2 1148 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 CYP46A1Q9Y6A2 500 aa36.34■■■■□ 3.41
CTCF-203ENST00000566078 NBPF3Q9H094 633 aa36.33■■■■□ 3.41
CTCF-203ENST00000566078 DAXXQ9UER7 740 aaPredicted RBP36.33■■■■□ 3.41
CTCF-203ENST00000566078 SOCS7O14512 581 aa36.32■■■■□ 3.4
CTCF-203ENST00000566078 USP5P45974 858 aa36.32■■■■□ 3.4
CTCF-203ENST00000566078 CXCL9Q07325 125 aa36.32■■■■□ 3.4
CTCF-203ENST00000566078 BLOC1S2Q6QNY1 142 aa36.32■■■■□ 3.4
CTCF-203ENST00000566078 NEK1Q96PY6 1258 aa36.32■■■■□ 3.4
CTCF-203ENST00000566078 SLC4A3P48751 1232 aa36.31■■■■□ 3.4
CTCF-203ENST00000566078 HDLBPQ00341 1268 aaKnown RBP36.31■■■■□ 3.4
CTCF-203ENST00000566078 RUFY3Q7L099 469 aa36.31■■■■□ 3.4
CTCF-203ENST00000566078 TEX11Q8IYF3 940 aa36.31■■■■□ 3.4
CTCF-203ENST00000566078 DCP1AQ9NPI6 582 aaPredicted RBP36.31■■■■□ 3.4
CTCF-203ENST00000566078 RHBDL3P58872 404 aa36.3■■■■□ 3.4
CTCF-203ENST00000566078 CIAPIN1Q6FI81 312 aa36.3■■■■□ 3.4
CTCF-203ENST00000566078 MRIQ9BWK5 157 aa36.3■■■■□ 3.4
CTCF-203ENST00000566078 TBC1D10CQ8IV04 446 aa36.3■■■■□ 3.4
CTCF-203ENST00000566078 IL27Q8NEV9 243 aa36.3■■■■□ 3.4
CTCF-203ENST00000566078 COL9A3Q14050 684 aaPredicted RBP36.29■■■■□ 3.4
CTCF-203ENST00000566078 SERPINA10Q9UK55 444 aa36.29■■■■□ 3.4
CTCF-203ENST00000566078 YBX3P16989 372 aaKnown RBP eCLIP36.28■■■■□ 3.46e-9■□□□□ 9
CTCF-203ENST00000566078 TGFBRAP1Q8WUH2 860 aa36.28■■■■□ 3.4
CTCF-203ENST00000566078 ZDHHC15Q96MV8 337 aa36.28■■■■□ 3.4
CTCF-203ENST00000566078 TTC14Q96N46 770 aa36.28■■■■□ 3.4
CTCF-203ENST00000566078 GMLQ99445 158 aa36.28■■■■□ 3.4
CTCF-203ENST00000566078 RPS6KB1P23443 525 aa36.27■■■■□ 3.4
CTCF-203ENST00000566078 RBM5P52756 815 aaKnown RBP eCLIP36.27■■■■□ 3.4
CTCF-203ENST00000566078 CTDSPL2Q05D32 466 aa36.27■■■■□ 3.4
CTCF-203ENST00000566078 PPARAQ07869 468 aa36.27■■■■□ 3.4
CTCF-203ENST00000566078 PDRG1Q9NUG6 133 aa36.27■■■■□ 3.4
CTCF-203ENST00000566078 ZBTB12Q9Y330 459 aaPredicted RBP36.27■■■■□ 3.4
CTCF-203ENST00000566078 MINDY4BA8MYZ0 360 aa36.26■■■■□ 3.4
CTCF-203ENST00000566078 TNIP1Q15025 636 aa36.26■■■■□ 3.4
CTCF-203ENST00000566078 APOBEC3HQ6NTF7 200 aaKnown RBP36.26■■■■□ 3.39
CTCF-203ENST00000566078 CTR9Q6PD62 1173 aa36.26■■■■□ 3.39
CTCF-203ENST00000566078 AGBL3Q8NEM8 1001 aa36.26■■■■□ 3.39
CTCF-203ENST00000566078 ARPP21Q9UBL0 812 aaPredicted RBP36.26■■■■□ 3.39
CTCF-203ENST00000566078 K7ELQ4 463 aaPredicted RBP36.25■■■■□ 3.39
CTCF-203ENST00000566078 HMGB1P09429 215 aaKnown RBP36.25■■■■□ 3.39
CTCF-203ENST00000566078 MAPKAPK5Q8IW41 473 aa36.25■■■■□ 3.39
CTCF-203ENST00000566078 MKRN1Q9UHC7 482 aaKnown RBP36.25■■■■□ 3.39
CTCF-203ENST00000566078 PCDHAC2Q9Y5I4 1007 aa36.25■■■■□ 3.39
CTCF-203ENST00000566078 LMNB1P20700 586 aa36.24■■■■□ 3.39
CTCF-203ENST00000566078 EIF6P56537 245 aaKnown RBP36.24■■■■□ 3.39
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms