RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ADAMTS2O95450 1211 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 TWISTNBQ3B726 338 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-203ENST00000547825 C16orf45Q96MC5 204 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-203ENST00000547825 DCTN1Q14203 1278 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 PHACTR3Q96KR7 559 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 CAMKK2Q96RR4 588 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 PRR14Q9BWN1 585 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 CHMP4AQ9BY43 222 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 IL1RAPL2Q9NP60 686 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 EXOC6BQ9Y2D4 811 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 A0A1B0GUL6 1792 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 HCLS1P14317 486 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-203ENST00000547825 GSPT1P15170 499 aaKnown RBP6.49□□□□□ -1.37
LIMA1-203ENST00000547825 WEE1P30291 646 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 STK3Q13188 491 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 AAMPQ13685 434 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 SEPT12Q8IYM1 358 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 CCDC112Q8NEF3 446 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 OTUD7AQ8TE49 926 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-203ENST00000547825 ZNF516Q92618 1163 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 JARID2Q92833 1246 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-203ENST00000547825 HS3ST6Q96QI5 342 aa6.49□□□□□ -1.37
LIMA1-203ENST00000547825 PPP1R1BQ9UD71 204 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-203ENST00000547825 NSFL1CQ9UNZ2 370 aaKnown RBP6.49□□□□□ -1.37
LIMA1-203ENST00000547825 KLHL40Q2TBA0 621 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 ZGPATQ8N5A5 531 aaKnown RBP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 ARMC2Q8NEN0 867 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 WNT2BQ93097 391 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 NGLY1Q96IV0 654 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 SAP130Q9H0E3 1048 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 LZTS3O60299 673 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 OFD1O75665 1012 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 ANKRD13DQ6ZTN6 518 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 WDR63Q8IWG1 891 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 MARCH10Q8NA82 808 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 GPKOWQ92917 476 aaPredicted RBP eCLIP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 GCC1Q96CN9 775 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 ASB16Q96NS5 453 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 ERC2O15083 957 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 ZKSCAN1P17029 563 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 HDAC1Q13547 482 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 C16orf71Q8IYS4 520 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 STK11IPQ8N1F8 1099 aa6.48□□□□□ -1.37
LIMA1-203ENST00000547825 TRMT1Q9NXH9 659 aaKnown RBP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 V9GYY5 206 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-203ENST00000547825 PES1O00541 588 aaKnown RBP6.47□□□□□ -1.37
LIMA1-203ENST00000547825 SURF6O75683 361 aaKnown RBP6.47□□□□□ -1.37
LIMA1-203ENST00000547825 ADCY5O95622 1261 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 TMPOP42166 694 aaKnown RBP6.47□□□□□ -1.37
LIMA1-203ENST00000547825 NUCB1Q02818 461 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 CHRNA2Q15822 529 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 TTLL5Q6EMB2 1281 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 CKAP2LQ8IYA6 745 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 MNS1Q8NEH6 495 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 SDF4Q9BRK5 362 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 RBSNQ9H1K0 784 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 CWC22Q9HCG8 908 aaKnown RBP6.47□□□□□ -1.37
LIMA1-203ENST00000547825 MIS18AQ9NYP9 233 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 DCTN4Q9UJW0 460 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 VGLL3A8MV65 326 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 TK2O00142 265 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 GNAI1P63096 354 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 ZDHHC9Q9Y397 364 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 PPFIA3O75145 1194 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 IL13P35225 146 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 FKBP4Q02790 459 aaKnown RBP eCLIP6.47□□□□□ -1.37
LIMA1-203ENST00000547825 SETDB2Q96T68 719 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 EGFL7Q9UHF1 273 aa6.47□□□□□ -1.37
LIMA1-203ENST00000547825 GOLGA8CPA6NN73 597 aa6.46□□□□□ -1.37
LIMA1-203ENST00000547825 P4HBP07237 508 aaKnown RBP6.46□□□□□ -1.37
LIMA1-203ENST00000547825 LMOD3Q0VAK6 560 aa6.46□□□□□ -1.37
LIMA1-203ENST00000547825 LDLRAD1Q5T700 205 aa6.46□□□□□ -1.37
LIMA1-203ENST00000547825 GIMAP6Q6P9H5 292 aa6.46□□□□□ -1.37
LIMA1-203ENST00000547825 ZKSCAN5Q9Y2L8 839 aa6.46□□□□□ -1.37
LIMA1-203ENST00000547825 COL11A2P13942 1736 aaPredicted RBP6.46□□□□□ -1.37
LIMA1-203ENST00000547825 CACNA1FO60840 1977 aa6.46□□□□□ -1.37
LIMA1-203ENST00000547825 DYNC1I1O14576 645 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 NUP98P52948 1817 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 TPM4P67936 248 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 RAB3GAP1Q15042 981 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 KRT24Q2M2I5 525 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 TBCELQ5QJ74 424 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 GOLGA6L1Q8N7Z2 621 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 ZNF511Q8NB15 262 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 POLR3GO15318 223 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-203ENST00000547825 AMPHP49418 695 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 TEX35Q5T0J7 233 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 NBPF6Q5VWK0 638 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 TMC7Q7Z402 723 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 TNS4Q8IZW8 715 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 NBPF4Q96M43 638 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 ATP10DQ9P241 1426 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 CEMIPQ8WUJ3 1361 aa6.46□□□□□ -1.38
LIMA1-203ENST00000547825 CCDC66A2RUB6 948 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 PLSCR1O15162 318 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 MPSTP25325 297 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 ZC3H6P61129 1189 aaKnown RBP6.45□□□□□ -1.38
LIMA1-203ENST00000547825 NUTM2GQ5VZR2 741 aa6.45□□□□□ -1.38
LIMA1-203ENST00000547825 NKX2-3Q8TAU0 364 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms