RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 USP17L4A6NCW7 530 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 WTIPA6NIX2 430 aaPredicted RBP9.97□□□□□ -0.81
SF3A1-210ENST00000498259 GSG1L2A8MUP6 293 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 C21orf2O43822 256 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 DPEP1P16444 411 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 PDCP20941 246 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 PRDX5P30044 214 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 HDLBPQ00341 1268 aaKnown RBP9.97□□□□□ -0.81
SF3A1-210ENST00000498259 R3HDM1Q15032 1099 aaKnown RBP9.97□□□□□ -0.81
SF3A1-210ENST00000498259 CCDC178Q5BJE1 867 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 AKNAD1Q5T1N1 836 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 SYNE3Q6ZMZ3 975 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 USP17L1Q7RTZ2 530 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 LCORLQ8N3X6 602 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 C7orf43Q8WVR3 580 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 ESR2Q92731 530 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 GBP4Q96PP9 640 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 RIOK1Q9BRS2 568 aaKnown RBP9.97□□□□□ -0.81
SF3A1-210ENST00000498259 ANAPC4Q9UJX5 808 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 ATF5Q9Y2D1 282 aaPredicted RBP9.97□□□□□ -0.81
SF3A1-210ENST00000498259 MROH7-TTC4A0A0A0MT08 1334 aa9.97□□□□□ -0.81
SF3A1-210ENST00000498259 DOCK2Q92608 1830 aa9.96□□□□□ -0.81
SF3A1-210ENST00000498259 GPR75-ASB3A0A0A6YYF3 556 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 A0A0G2JLW4 131 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 GOLGA6L22H0YM25 854 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 PPIP5K2O43314 1243 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 CHGBP05060 677 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 SLFNL1Q499Z3 407 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 SBK1Q52WX2 424 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 CPLX2Q6PUV4 134 aaKnown RBP9.96□□□□□ -0.82
SF3A1-210ENST00000498259 HHIPL2Q6UWX4 724 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 Q6ZUG5 572 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 SPRYD3Q8NCJ5 442 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 STAG1Q8WVM7 1258 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 TEKT1Q969V4 418 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 ZNF274Q96GC6 653 aaPredicted RBP9.96□□□□□ -0.82
SF3A1-210ENST00000498259 LLPHQ9BRT6 129 aaKnown RBP9.96□□□□□ -0.82
SF3A1-210ENST00000498259 SPON1Q9HCB6 807 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 AATFQ9NY61 560 aaKnown RBP eCLIP9.96□□□□□ -0.82
SF3A1-210ENST00000498259 HDAC9Q9UKV0 1011 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 SMC3Q9UQE7 1217 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 ATP6V1DQ9Y5K8 247 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 COL4A1P02462 1669 aa9.96□□□□□ -0.82
SF3A1-210ENST00000498259 MINDY4BA8MYZ0 360 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 ECE2O60344 883 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 CD2BP2O95400 341 aaKnown RBP9.95□□□□□ -0.82
SF3A1-210ENST00000498259 HAND2P61296 217 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 EXOSC10Q01780 885 aaKnown RBP9.95□□□□□ -0.82
SF3A1-210ENST00000498259 PPARAQ07869 468 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 PPP2R5BQ15173 497 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 DOK7Q18PE1 504 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 IQCA1Q86XH1 822 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 OGFOD1Q8N543 542 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 JDP2Q8WYK2 163 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 UBAC1Q9BSL1 405 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 PDGFDQ9GZP0 370 aaPredicted RBP9.95□□□□□ -0.82
SF3A1-210ENST00000498259 TOMM22Q9NS69 142 aa9.95□□□□□ -0.82
SF3A1-210ENST00000498259 PPP1R1BQ9UD71 204 aaPredicted RBP9.95□□□□□ -0.82
SF3A1-210ENST00000498259 TTF2Q9UNY4 1162 aaKnown RBP9.95□□□□□ -0.82
SF3A1-210ENST00000498259 COL1A1P02452 1464 aaPredicted RBP9.95□□□□□ -0.82
SF3A1-210ENST00000498259 MYH13Q9UKX3 1938 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 CCDC196A0A1B0GTZ2 297 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 PRC1O43663 620 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 CDKL5O76039 1030 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 LIFRP42702 1097 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 BTDP43251 543 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 HMGN5P82970 282 aaKnown RBP9.94□□□□□ -0.82
SF3A1-210ENST00000498259 PPP4R3BQ5MIZ7 849 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 NOL8Q76FK4 1167 aaKnown RBP9.94□□□□□ -0.82
SF3A1-210ENST00000498259 TTC6Q86TZ1 520 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 NIM1KQ8IY84 436 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 LARGE2Q8N3Y3 721 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 BRF1Q92994 677 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 GPR101Q96P66 508 aaPredicted RBP9.94□□□□□ -0.82
SF3A1-210ENST00000498259 ANP32EQ9BTT0 268 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 AGXT2Q9BYV1 514 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 TAOK3Q9H2K8 898 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 DCP1AQ9NPI6 582 aaPredicted RBP9.94□□□□□ -0.82
SF3A1-210ENST00000498259 MCM9Q9NXL9 1143 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 ZNF219Q9P2Y4 722 aaPredicted RBP9.94□□□□□ -0.82
SF3A1-210ENST00000498259 SERPINA10Q9UK55 444 aa9.94□□□□□ -0.82
SF3A1-210ENST00000498259 ANGEL1Q9UNK9 670 aaKnown RBP9.94□□□□□ -0.82
SF3A1-210ENST00000498259 CCDC88AQ3V6T2 1871 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 GAKO14976 1311 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 WDR33Q9C0J8 1336 aaKnown RBP9.93□□□□□ -0.82
SF3A1-210ENST00000498259 CCDC69A6NI79 296 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 FOXP2O15409 715 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 POLR3DP05423 398 aaPredicted RBP9.93□□□□□ -0.82
SF3A1-210ENST00000498259 KCNA3P22001 575 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 RCAN1P53805 252 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 EVCP57679 992 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 TNIP1Q15025 636 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 NFXL1Q6ZNB6 911 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 ADGRA1Q86SQ6 560 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 TEX11Q8IYF3 940 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 SDR42E1Q8WUS8 393 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 DBNDD1Q9H9R9 158 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 ZNRF3Q9ULT6 936 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 JAG2Q9Y219 1238 aa9.93□□□□□ -0.82
SF3A1-210ENST00000498259 MAST2Q6P0Q8 1798 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms