RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 CAPN10Q9HC96 672 aa9.22□□□□□ -0.93
SF3B1-210ENST00000482158 FAM221AA4D161 298 aa9.21□□□□□ -0.94
SF3B1-210ENST00000482158 ZNF862O60290 1169 aa9.21□□□□□ -0.94
SF3B1-210ENST00000482158 EIF4EBP3O60516 100 aaPredicted RBP9.21□□□□□ -0.94
SF3B1-210ENST00000482158 TRIM37O94972 964 aa9.21□□□□□ -0.94
SF3B1-210ENST00000482158 F13A1P00488 732 aa9.21□□□□□ -0.94
SF3B1-210ENST00000482158 RAC1P63000 192 aa9.21□□□□□ -0.94
SF3B1-210ENST00000482158 INSM1Q01101 510 aaPredicted RBP9.21□□□□□ -0.94
SF3B1-210ENST00000482158 KIAA0825Q8IV33 1275 aa9.21□□□□□ -0.94
SF3B1-210ENST00000482158 BEND7Q8N7W2 519 aaPredicted RBP9.21□□□□□ -0.94
SF3B1-210ENST00000482158 KCNB2Q92953 911 aa9.21□□□□□ -0.94
SF3B1-210ENST00000482158 WDR89Q96FK6 387 aaPredicted RBP9.21□□□□□ -0.94
SF3B1-210ENST00000482158 CORO1BQ9BR76 489 aa9.21□□□□□ -0.94
SF3B1-210ENST00000482158 COL8A1P27658 744 aa9.2□□□□□ -0.94
SF3B1-210ENST00000482158 TRIM28Q13263 835 aaKnown RBP9.2□□□□□ -0.94
SF3B1-210ENST00000482158 SCARA3Q6AZY7 606 aa9.2□□□□□ -0.94
SF3B1-210ENST00000482158 CCDC84Q86UT8 332 aaPredicted RBP9.2□□□□□ -0.94
SF3B1-210ENST00000482158 SLC43A3Q8NBI5 491 aa9.2□□□□□ -0.94
SF3B1-210ENST00000482158 GPBAR1Q8TDU6 330 aa9.2□□□□□ -0.94
SF3B1-210ENST00000482158 NT5C1AQ9BXI3 368 aa9.2□□□□□ -0.94
SF3B1-210ENST00000482158 MIR1-1HGQ9H1L0 117 aa9.2□□□□□ -0.94
SF3B1-210ENST00000482158 KRT82Q9NSB4 513 aa9.2□□□□□ -0.94
SF3B1-210ENST00000482158 INPP5FQ9Y2H2 1132 aa9.2□□□□□ -0.94
SF3B1-210ENST00000482158 SUPT16HQ9Y5B9 1047 aaKnown RBP9.2□□□□□ -0.94
SF3B1-210ENST00000482158 SPDYE3A6NKU9 549 aa9.19□□□□□ -0.94
SF3B1-210ENST00000482158 ELNP15502 786 aa9.19□□□□□ -0.94
SF3B1-210ENST00000482158 CRKP46108 304 aa9.19□□□□□ -0.94
SF3B1-210ENST00000482158 SNAP47Q5SQN1 464 aa9.19□□□□□ -0.94
SF3B1-210ENST00000482158 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.19□□□□□ -0.94
SF3B1-210ENST00000482158 FAM196AQ6ZSG2 479 aa9.19□□□□□ -0.94
SF3B1-210ENST00000482158 KIAA1211Q6ZU35 1233 aa9.19□□□□□ -0.94
SF3B1-210ENST00000482158 FBXO27Q8NI29 283 aa9.19□□□□□ -0.94
SF3B1-210ENST00000482158 RASGRP4Q8TDF6 673 aa9.19□□□□□ -0.94
SF3B1-210ENST00000482158 JARID2Q92833 1246 aaPredicted RBP9.19□□□□□ -0.94
SF3B1-210ENST00000482158 LOC100996750A0A140TA64 210 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 PIK3R2O00459 728 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 CILPO75339 1184 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 LIG1P18858 919 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 CDK8P49336 464 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 GRIK4Q16099 956 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 SHISA2Q6UWI4 295 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 GATAD2BQ8WXI9 593 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 GPRASP2Q96D09 838 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 KRTAP4-6Q9BYQ5 205 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 UBP1Q9NZI7 540 aa9.18□□□□□ -0.94
SF3B1-210ENST00000482158 DUOXA2Q1HG44 320 aa9.17□□□□□ -0.94
SF3B1-210ENST00000482158 KIF4BQ2VIQ3 1234 aa9.17□□□□□ -0.94
SF3B1-210ENST00000482158 IGF2-ASQ6U949 168 aa9.17□□□□□ -0.94
SF3B1-210ENST00000482158 PODNQ7Z5L7 613 aa9.17□□□□□ -0.94
SF3B1-210ENST00000482158 DCAF11Q8TEB1 546 aa9.17□□□□□ -0.94
SF3B1-210ENST00000482158 WDR18Q9BV38 432 aa9.17□□□□□ -0.94
SF3B1-210ENST00000482158 LRRC3Q9BY71 257 aa9.17□□□□□ -0.94
SF3B1-210ENST00000482158 NOP53Q9NZM5 478 aaKnown RBP9.17□□□□□ -0.94
SF3B1-210ENST00000482158 PCDHGC5Q9Y5F6 944 aa9.17□□□□□ -0.94
SF3B1-210ENST00000482158 GMLQ99445 158 aa9.16□□□□□ -0.94
SF3B1-210ENST00000482158 TMPRSS13Q9BYE2 586 aa9.16□□□□□ -0.94
SF3B1-210ENST00000482158 AOC2O75106 756 aa9.15□□□□□ -0.94
SF3B1-210ENST00000482158 LMNB1P20700 586 aa9.15□□□□□ -0.94
SF3B1-210ENST00000482158 PDE3AQ14432 1141 aa9.15□□□□□ -0.94
SF3B1-210ENST00000482158 INPP5AQ14642 412 aa9.15□□□□□ -0.94
SF3B1-210ENST00000482158 PRRT3Q5FWE3 981 aa9.15□□□□□ -0.94
SF3B1-210ENST00000482158 EXOSC6Q5RKV6 272 aaKnown RBP9.15□□□□□ -0.94
SF3B1-210ENST00000482158 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.15□□□□□ -0.94
SF3B1-210ENST00000482158 PCDHA4Q9UN74 947 aa9.15□□□□□ -0.94
SF3B1-210ENST00000482158 ROBO2Q9HCK4 1378 aa9.14□□□□□ -0.95
SF3B1-210ENST00000482158 MEGF11A6BM72 1044 aa9.14□□□□□ -0.95
SF3B1-210ENST00000482158 TLR3O15455 904 aaKnown RBP9.14□□□□□ -0.95
SF3B1-210ENST00000482158 SPATA31C1P0DKV0 1188 aa9.14□□□□□ -0.95
SF3B1-210ENST00000482158 ACAD11Q709F0 780 aa9.14□□□□□ -0.95
SF3B1-210ENST00000482158 SLITRK4Q8IW52 837 aa9.14□□□□□ -0.95
SF3B1-210ENST00000482158 SCARF2Q96GP6 870 aaPredicted RBP9.14□□□□□ -0.95
SF3B1-210ENST00000482158 RUSC1Q9BVN2 902 aa9.14□□□□□ -0.95
SF3B1-210ENST00000482158 MRPL18Q9H0U6 180 aaKnown RBP9.14□□□□□ -0.95
SF3B1-210ENST00000482158 GFRA2O00451 464 aa9.13□□□□□ -0.95
SF3B1-210ENST00000482158 ATF4P18848 351 aaPredicted RBP9.13□□□□□ -0.95
SF3B1-210ENST00000482158 RPL6Q02878 288 aaKnown RBP9.13□□□□□ -0.95
SF3B1-210ENST00000482158 MPP2Q14168 576 aa9.13□□□□□ -0.95
SF3B1-210ENST00000482158 LRFN4Q6PJG9 635 aa9.13□□□□□ -0.95
SF3B1-210ENST00000482158 TMEM130Q8N3G9 435 aa9.13□□□□□ -0.95
SF3B1-210ENST00000482158 SYNGAP1Q96PV0 1343 aa9.12□□□□□ -0.95
SF3B1-210ENST00000482158 F8W735 103 aaPredicted RBP9.12□□□□□ -0.95
SF3B1-210ENST00000482158 APOBRQ0VD83 1088 aa9.12□□□□□ -0.95
SF3B1-210ENST00000482158 GNL2Q13823 731 aaKnown RBP9.12□□□□□ -0.95
SF3B1-210ENST00000482158 ZC3H12AQ5D1E8 599 aaKnown RBP9.12□□□□□ -0.95
SF3B1-210ENST00000482158 REC114Q7Z4M0 266 aa9.12□□□□□ -0.95
SF3B1-210ENST00000482158 AGGF1Q8N302 714 aaeCLIP9.12□□□□□ -0.95
SF3B1-210ENST00000482158 NKD1Q969G9 470 aa9.12□□□□□ -0.95
SF3B1-210ENST00000482158 LENG1Q96BZ8 264 aaPredicted RBP9.12□□□□□ -0.95
SF3B1-210ENST00000482158 ACSBG1Q96GR2 724 aa9.12□□□□□ -0.95
SF3B1-210ENST00000482158 GINM1Q9NU53 330 aa9.12□□□□□ -0.95
SF3B1-210ENST00000482158 PPP1R9AQ9ULJ8 1098 aa9.12□□□□□ -0.95
SF3B1-210ENST00000482158 POLR3KQ9Y2Y1 108 aaPredicted RBP9.12□□□□□ -0.95
SF3B1-210ENST00000482158 IGSF3O75054 1194 aa9.11□□□□□ -0.95
SF3B1-210ENST00000482158 ALX3O95076 343 aa9.11□□□□□ -0.95
SF3B1-210ENST00000482158 SOX9P48436 509 aa9.11□□□□□ -0.95
SF3B1-210ENST00000482158 SEZ6Q53EL9 994 aa9.11□□□□□ -0.95
SF3B1-210ENST00000482158 SREK1Q8WXA9 508 aaKnown RBP9.11□□□□□ -0.95
SF3B1-210ENST00000482158 PLPPR2Q96GM1 343 aa9.11□□□□□ -0.95
SF3B1-210ENST00000482158 RNF208Q9H0X6 261 aa9.11□□□□□ -0.95
SF3B1-210ENST00000482158 SUGCTQ9HAC7 445 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms