RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 HIP1O00291 1037 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 SRGAP3O43295 1099 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 CPA1P15085 419 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 PTH1RQ03431 593 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 LRMPQ12912 555 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 AOC3Q16853 763 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 CREBRFQ8IUR6 639 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 DRC7Q8IY82 874 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 PLBD2Q8NHP8 589 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 AIDAQ96BJ3 306 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 C16orf45Q96MC5 204 aaPredicted RBP11.22□□□□□ -0.61
HDAC3-205ENST00000469550 ISCA1Q9BUE6 129 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 ADARB2Q9NS39 739 aaKnown RBP11.22□□□□□ -0.61
HDAC3-205ENST00000469550 DACT1Q9NYF0 836 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 FAM53CQ9NYF3 392 aa11.22□□□□□ -0.61
HDAC3-205ENST00000469550 TRMT112Q9UI30 125 aaKnown RBP11.22□□□□□ -0.61
HDAC3-205ENST00000469550 GOLGA6L4A6NEF3 574 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 ZNF165P49910 485 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 CXCL9Q07325 125 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 SLFNL1Q499Z3 407 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 TPRNQ4KMQ1 711 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 DPP8Q6V1X1 898 aaPredicted RBP11.21□□□□□ -0.61
HDAC3-205ENST00000469550 DDX46Q7L014 1031 aaKnown RBP11.21□□□□□ -0.61
HDAC3-205ENST00000469550 KIF18AQ8NI77 898 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 MAP4K1Q92918 833 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 EVI5LQ96CN4 794 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 MRFAP1L1Q96HT8 127 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 ECHDC1Q9NTX5 307 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 CHPF2Q9P2E5 772 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 PGAP2Q9UHJ9 254 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 TPCN1Q9ULQ1 816 aa11.21□□□□□ -0.61
HDAC3-205ENST00000469550 SLFN14P0C7P3 912 aa11.21□□□□□ -0.62
HDAC3-205ENST00000469550 SF3B3Q15393 1217 aaKnown RBP11.21□□□□□ -0.62
HDAC3-205ENST00000469550 CAMK4Q16566 473 aa11.21□□□□□ -0.62
HDAC3-205ENST00000469550 TPD52L1Q16890 204 aaPredicted RBP11.21□□□□□ -0.62
HDAC3-205ENST00000469550 CEP135Q66GS9 1140 aa11.21□□□□□ -0.62
HDAC3-205ENST00000469550 CDC37L1Q7L3B6 337 aa11.21□□□□□ -0.62
HDAC3-205ENST00000469550 CLASRPQ8N2M8 674 aaKnown RBP11.21□□□□□ -0.62
HDAC3-205ENST00000469550 ZNF397Q8NF99 534 aaPredicted RBP11.21□□□□□ -0.62
HDAC3-205ENST00000469550 CACTINQ8WUQ7 758 aaKnown RBP11.21□□□□□ -0.62
HDAC3-205ENST00000469550 LEO1Q8WVC0 666 aaPredicted RBP11.21□□□□□ -0.62
HDAC3-205ENST00000469550 GPATCH3Q96I76 525 aa11.21□□□□□ -0.62
HDAC3-205ENST00000469550 SPATA32Q96LK8 384 aa11.21□□□□□ -0.62
HDAC3-205ENST00000469550 DBF4Q9UBU7 674 aaPredicted RBP11.21□□□□□ -0.62
HDAC3-205ENST00000469550 CLIP2Q9UDT6 1046 aa11.21□□□□□ -0.62
HDAC3-205ENST00000469550 NRBP1Q9UHY1 535 aa11.21□□□□□ -0.62
HDAC3-205ENST00000469550 AIMP1Q12904 312 aaKnown RBP11.2□□□□□ -0.62
HDAC3-205ENST00000469550 TRIM28Q13263 835 aaKnown RBP11.2□□□□□ -0.62
HDAC3-205ENST00000469550 HDGFL1Q5TGJ6 251 aa11.2□□□□□ -0.62
HDAC3-205ENST00000469550 CREB3L3Q68CJ9 461 aa11.2□□□□□ -0.62
HDAC3-205ENST00000469550 NYAP1Q6ZVC0 841 aa11.2□□□□□ -0.62
HDAC3-205ENST00000469550 ZNF771Q7L3S4 317 aaPredicted RBP11.2□□□□□ -0.62
HDAC3-205ENST00000469550 ERC1Q8IUD2 1116 aa11.2□□□□□ -0.62
HDAC3-205ENST00000469550 KIF2AO00139 706 aaPredicted RBP11.19□□□□□ -0.62
HDAC3-205ENST00000469550 MAP2K1Q02750 393 aaPredicted RBP11.19□□□□□ -0.62
HDAC3-205ENST00000469550 TSGA10IPQ3SY00 556 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 BEND3Q5T5X7 828 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 RNF20Q5VTR2 975 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 CIAPIN1Q6FI81 312 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 ANKRD13DQ6ZTN6 518 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 LRRC8AQ8IWT6 810 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 CKAP2LQ8IYA6 745 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 KRT222Q8N1A0 295 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 ZC3H15Q8WU90 426 aaKnown RBP11.19□□□□□ -0.62
HDAC3-205ENST00000469550 NECTIN2Q92692 538 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 HDAC5Q9UQL6 1122 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 RBM8AQ9Y5S9 174 aaKnown RBP11.19□□□□□ -0.62
HDAC3-205ENST00000469550 TLL2Q9Y6L7 1015 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 CTAGE5O15320 804 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 CAPN15O75808 1086 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 HSPA8P11142 646 aaKnown RBP11.19□□□□□ -0.62
HDAC3-205ENST00000469550 ECE1P42892 770 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 GMPSP49915 693 aaPredicted RBP11.19□□□□□ -0.62
HDAC3-205ENST00000469550 TNIP1Q15025 636 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 IQCB1Q15051 598 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 TERF2Q15554 542 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 CST9Q5W186 159 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 NECAB1Q8N987 351 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 ERO1AQ96HE7 468 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 HHIPL1Q96JK4 782 aa11.19□□□□□ -0.62
HDAC3-205ENST00000469550 ABT1Q9ULW3 272 aaKnown RBP11.19□□□□□ -0.62
HDAC3-205ENST00000469550 COL4A1P02462 1669 aa11.18□□□□□ -0.62
HDAC3-205ENST00000469550 CCDC144BQ3MJ40 725 aa11.18□□□□□ -0.62
HDAC3-205ENST00000469550 CCDC144CPQ8IYA2 1237 aa11.18□□□□□ -0.62
HDAC3-205ENST00000469550 PSME4Q14997 1843 aa11.18□□□□□ -0.62
HDAC3-205ENST00000469550 CCDC66A2RUB6 948 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 YDJCA8MPS7 323 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 SLC27A2O14975 620 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 NBPF7P0C2Y1 421 aaPredicted RBP11.17□□□□□ -0.62
HDAC3-205ENST00000469550 PTPN14Q15678 1187 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 BLOC1S2Q6QNY1 142 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 DNAAF4Q8WXU2 420 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 PGBD1Q96JS3 809 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 CAPNS2Q96L46 248 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 ZSCAN16Q9H4T2 348 aaPredicted RBP11.17□□□□□ -0.62
HDAC3-205ENST00000469550 PHAXQ9H814 394 aaKnown RBP11.17□□□□□ -0.62
HDAC3-205ENST00000469550 HMG20BQ9P0W2 317 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 CFAP45Q9UL16 551 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 ZNF609O15014 1411 aa11.17□□□□□ -0.62
HDAC3-205ENST00000469550 PCNTO95613 3336 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms