RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 WFDC12Q8WWY7 111 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 ZC3H12CQ9C0D7 883 aaKnown RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 MRPL18Q9H0U6 180 aaKnown RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 TPSG1Q9NRR2 321 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 NUP153P49790 1475 aaKnown RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 RAPGEF6Q8TEU7 1601 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 F8W735 103 aaPredicted RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 B3GALT4O96024 378 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 CTSBP07858 339 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 MFAP1P55081 439 aaKnown RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 TPTE2Q6XPS3 522 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 TRIM56Q9BRZ2 755 aaKnown RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 AKTIPQ9H8T0 292 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 SRA1Q9HD15 236 aaKnown RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 GPN3Q9UHW5 284 aaPredicted RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 TRAK1Q9UPV9 953 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 WDR7Q9Y4E6 1490 aa3.88□□□□□ -1.79
VPS13A-208ENST00000423463 EPRSP07814 1512 aaKnown RBP3.88□□□□□ -1.79
VPS13A-208ENST00000423463 GLI2P10070 1586 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 LOC100289279A0A1B0GTE1 492 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 PRPF40AO75400 957 aaKnown RBP3.87□□□□□ -1.79
VPS13A-208ENST00000423463 FURINP09958 794 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 USP17L7P0C7H9 530 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 SUZ12Q15022 739 aaKnown RBP3.87□□□□□ -1.79
VPS13A-208ENST00000423463 KIAA1211Q6ZU35 1233 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 FBXO33Q7Z6M2 555 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 NRSN2Q9GZP1 204 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 PARP2Q9UGN5 583 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 ZCCHC11Q5TAX3 1644 aaKnown RBP3.87□□□□□ -1.79
VPS13A-208ENST00000423463 MAOBP27338 520 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 SPG7Q9UQ90 795 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 CEP162Q5TB80 1403 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 CASKIN1Q8WXD9 1431 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 DIP2BQ9P265 1576 aa3.87□□□□□ -1.79
VPS13A-208ENST00000423463 GNA15P30679 374 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 ARL4DP49703 201 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 GIPC2Q8TF65 315 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 WNT8BQ93098 351 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 C12orf49Q9H741 205 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 OSGEPQ9NPF4 335 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 DRD2P14416 443 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 TP53INP1Q96A56 240 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 UBL7Q96S82 380 aaPredicted RBP3.86□□□□□ -1.79
VPS13A-208ENST00000423463 CCDC9Q9Y3X0 531 aaKnown RBP3.86□□□□□ -1.79
VPS13A-208ENST00000423463 CD109Q6YHK3 1445 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 PAGE1O75459 146 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 GSTT1P30711 240 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 PREPP48147 710 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 MEI1Q5TIA1 1274 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 STK35Q8TDR2 534 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 RUSC1Q9BVN2 902 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 BCL2L13Q9BXK5 485 aa3.86□□□□□ -1.79
VPS13A-208ENST00000423463 PHLDB1Q86UU1 1377 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 CELA3AP09093 270 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 TMEM130Q8N3G9 435 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 KIF13AQ9H1H9 1805 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 TEX14Q8IWB6 1497 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 MAGI3Q5TCQ9 1506 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 HECW1Q76N89 1606 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 ENC1O14682 589 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 PSMD2Q13200 908 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 POU4F3Q15319 338 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 MPRIPQ6WCQ1 1025 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 CORO1BQ9BR76 489 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 SSBP4Q9BWG4 385 aaPredicted RBP3.85□□□□□ -1.79
VPS13A-208ENST00000423463 RNF208Q9H0X6 261 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 SOX17Q9H6I2 414 aaPredicted RBP3.85□□□□□ -1.79
VPS13A-208ENST00000423463 FAM8A1Q9UBU6 413 aa3.85□□□□□ -1.79
VPS13A-208ENST00000423463 TTF2Q9UNY4 1162 aaKnown RBP3.85□□□□□ -1.79
VPS13A-208ENST00000423463 CCDC18Q5T9S5 1454 aa3.84□□□□□ -1.79
VPS13A-208ENST00000423463 FYCO1Q9BQS8 1478 aa3.84□□□□□ -1.79
VPS13A-208ENST00000423463 F6X3S4 739 aa3.84□□□□□ -1.79
VPS13A-208ENST00000423463 EIF4BP23588 611 aaKnown RBP3.84□□□□□ -1.79
VPS13A-208ENST00000423463 XPCQ01831 940 aaPredicted RBP3.84□□□□□ -1.79
VPS13A-208ENST00000423463 PTPN12Q05209 780 aaKnown RBP3.84□□□□□ -1.79
VPS13A-208ENST00000423463 PDE3AQ14432 1141 aa3.84□□□□□ -1.79
VPS13A-208ENST00000423463 FDX2Q6P4F2 183 aa3.84□□□□□ -1.79
VPS13A-208ENST00000423463 DZIP1LQ8IYY4 767 aaKnown RBP3.84□□□□□ -1.79
VPS13A-208ENST00000423463 WDR89Q96FK6 387 aaPredicted RBP3.84□□□□□ -1.79
VPS13A-208ENST00000423463 TMEM39AQ9NV64 488 aa3.84□□□□□ -1.79
VPS13A-208ENST00000423463 PPP4R2Q9NY27 417 aa3.84□□□□□ -1.79
VPS13A-208ENST00000423463 TROQ12816 1431 aaPredicted RBP3.84□□□□□ -1.79
VPS13A-208ENST00000423463 CDK13Q14004 1512 aaKnown RBP3.84□□□□□ -1.8
VPS13A-208ENST00000423463 IGHA1P01876 353 aa3.84□□□□□ -1.8
VPS13A-208ENST00000423463 CYP11A1P05108 521 aa3.84□□□□□ -1.8
VPS13A-208ENST00000423463 COL19A1Q14993 1142 aa3.84□□□□□ -1.8
VPS13A-208ENST00000423463 RASIP1Q5U651 963 aa3.84□□□□□ -1.8
VPS13A-208ENST00000423463 NUTM2GQ5VZR2 741 aa3.84□□□□□ -1.8
VPS13A-208ENST00000423463 C12orf50Q8NA57 414 aaPredicted RBP3.84□□□□□ -1.8
VPS13A-208ENST00000423463 DCAF11Q8TEB1 546 aa3.84□□□□□ -1.8
VPS13A-208ENST00000423463 UTP4Q969X6 686 aaKnown RBP3.84□□□□□ -1.8
VPS13A-208ENST00000423463 SRCIN1Q9C0H9 1055 aa3.84□□□□□ -1.8
VPS13A-208ENST00000423463 CTSHP09668 335 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 XRCC5P13010 732 aaKnown RBP3.83□□□□□ -1.8
VPS13A-208ENST00000423463 DAB2P98082 770 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 AKAP4Q5JQC9 854 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 EFCAB2Q5VUJ9 269 aa3.83□□□□□ -1.8
VPS13A-208ENST00000423463 MAP1SQ66K74 1059 aaPredicted RBP3.83□□□□□ -1.8
VPS13A-208ENST00000423463 Q6ZS46 218 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms