RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.52□□□□□ -0.578e-7■■■■□ 20.3
CHD3-201ENST00000330494 STK32BQ9NY57 414 aa11.52□□□□□ -0.57
CHD3-201ENST00000330494 MAGI3Q5TCQ9 1506 aa11.52□□□□□ -0.57
CHD3-201ENST00000330494 NEMFO60524 1076 aa11.52□□□□□ -0.57
CHD3-201ENST00000330494 CCDC91Q7Z6B0 441 aa11.52□□□□□ -0.57
CHD3-201ENST00000330494 GCC2Q8IWJ2 1684 aa11.52□□□□□ -0.57
CHD3-201ENST00000330494 BMP15O95972 392 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 UVSSAQ2YD98 709 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 PUS7Q96PZ0 661 aaKnown RBP11.51□□□□□ -0.57
CHD3-201ENST00000330494 LZTFL1Q9NQ48 299 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 XRCC6P12956 609 aaKnown RBP eCLIP11.51□□□□□ -0.57
CHD3-201ENST00000330494 EEF2P13639 858 aaKnown RBP11.51□□□□□ -0.57
CHD3-201ENST00000330494 FAM200AQ8TCP9 573 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 H0YIN7 160 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 RAD51AP2Q09MP3 1159 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 SPATA5Q8NB90 893 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 TIGD1Q96MW7 591 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 YEATS2Q9ULM3 1422 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 MYCLP12524 364 aaPredicted RBP11.51□□□□□ -0.57
CHD3-201ENST00000330494 KDM6BO15054 1643 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 GNA11P29992 359 aa11.51□□□□□ -0.57
CHD3-201ENST00000330494 NAA15Q9BXJ9 866 aaKnown RBP11.51□□□□□ -0.57
CHD3-201ENST00000330494 SORBS3O60504 671 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 CTAGE1Q96RT6 745 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 RBM28Q9NW13 759 aaKnown RBP11.5□□□□□ -0.57
CHD3-201ENST00000330494 ZFYVE16Q7Z3T8 1539 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 UGGT1Q9NYU2 1555 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 NEURL1BA8MQ27 555 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 CPXCR1Q8N123 301 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 LARGE2Q8N3Y3 721 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 TBC1D7Q9P0N9 293 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 TXKP42681 527 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 RAPGEF1Q13905 1077 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 KCNJ14Q9UNX9 436 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 PARP10Q53GL7 1025 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 IL17REQ8NFR9 667 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 APPBP2Q92624 585 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 PAIP2Q9BPZ3 127 aaKnown RBP11.5□□□□□ -0.57
CHD3-201ENST00000330494 JAK2O60674 1132 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 CYLC1P35663 651 aaPredicted RBP11.5□□□□□ -0.57
CHD3-201ENST00000330494 TTC6Q86TZ1 520 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 PICK1Q9NRD5 415 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 GCOM1H8Y6P7 765 aaPredicted RBP11.5□□□□□ -0.57
CHD3-201ENST00000330494 POLR2DO15514 142 aaKnown RBP11.5□□□□□ -0.57
CHD3-201ENST00000330494 MYZAPP0CAP1 466 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 TAOK3Q9H2K8 898 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 GUCA1BQ9UMX6 200 aa11.5□□□□□ -0.57
CHD3-201ENST00000330494 SEC62Q99442 399 aaKnown RBP11.49□□□□□ -0.57
CHD3-201ENST00000330494 PTPRTO14522 1441 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 MCM3P25205 808 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 DOK7Q18PE1 504 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 MAP3K9P80192 1104 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.49□□□□□ -0.57
CHD3-201ENST00000330494 GINS2Q9Y248 185 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 GYG1P46976 350 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 NOLC1Q14978 699 aaKnown RBP eCLIP11.49□□□□□ -0.571e-49■■■■■ 70.7
CHD3-201ENST00000330494 KIAA0753Q2KHM9 967 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 CCDC50Q8IVM0 306 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 LPIN2Q92539 896 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 VPS16Q9H269 839 aa11.49□□□□□ -0.57
CHD3-201ENST00000330494 CTSWP56202 376 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 GTF2IP78347 998 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 NEK11Q8NG66 645 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 STAMQ92783 540 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 SRRTQ9BXP5 876 aaKnown RBP11.48□□□□□ -0.57
CHD3-201ENST00000330494 BIN2Q9UBW5 565 aaPredicted RBP11.48□□□□□ -0.57
CHD3-201ENST00000330494 PLXNC1O60486 1568 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 ATP2C2O75185 946 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 SAMD9Q5K651 1589 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 CCDC169A6NNP5 214 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 SMC1AQ14683 1233 aaKnown RBP11.48□□□□□ -0.57
CHD3-201ENST00000330494 SDR42E1Q8WUS8 393 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 ANGEL1Q9UNK9 670 aaKnown RBP11.48□□□□□ -0.57
CHD3-201ENST00000330494 SMIM23A6NLE4 172 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 KRT5P13647 590 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 NCAPH2Q6IBW4 605 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 BRAPQ7Z569 592 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 SCNN1DP51172 638 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 GSTA5Q7RTV2 222 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 SERPINA10Q9UK55 444 aa11.48□□□□□ -0.57
CHD3-201ENST00000330494 TMEM2Q9UHN6 1383 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 PHKG2P15735 406 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 BCAMP50895 628 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 MCM6Q14566 821 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 PRAMEF22A3QJZ6 481 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 LRRC24Q50LG9 513 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 FRMPD2Q68DX3 1309 aaPredicted RBP11.47□□□□□ -0.57
CHD3-201ENST00000330494 ARHGEF10O15013 1369 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 CDC37L1Q7L3B6 337 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 IMPG2Q9BZV3 1241 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 IFI16Q16666 785 aaKnown RBP11.47□□□□□ -0.57
CHD3-201ENST00000330494 ZNF569Q5MCW4 686 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 SV2BQ7L1I2 683 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 KBTBD3Q8NAB2 608 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 GADD45BO75293 160 aaPredicted RBP11.47□□□□□ -0.57
CHD3-201ENST00000330494 CCDC172P0C7W6 258 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 MNAT1P51948 309 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 TRAF1Q13077 416 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 KIFC2Q96AC6 838 aa11.47□□□□□ -0.57
CHD3-201ENST00000330494 VPS54Q9P1Q0 977 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms