RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 PRKG1Q13976 671 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 MYRIPQ8NFW9 859 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 DYTNA2CJ06 578 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 ARHGAP42A6NI28 874 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 ZCRB1Q8TBF4 217 aaKnown RBP12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 RILPQ96NA2 401 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 SERPINB6P35237 376 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 RUFY4Q6ZNE9 571 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 ZFYVE1Q9HBF4 777 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 PLCB3Q01970 1234 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 TCP11L1Q9NUJ3 509 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 ZSCAN26Q16670 478 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 SCOCQ9UIL1 159 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 WDR78Q5VTH9 848 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 USP48Q86UV5 1035 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 KLHL34Q8N239 644 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 ATP6V0A1Q93050 837 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 ZNF569Q5MCW4 686 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 HGSO14964 777 aaPredicted RBP12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 PAIP2BQ9ULR5 123 aaKnown RBP12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 THOC2Q8NI27 1593 aaKnown RBP12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 RAB11FIP3O75154 756 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 NFE2L2Q16236 605 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 TRIM47Q96LD4 638 aa12.47□□□□□ -0.41
HDGFL3-201ENST00000299633 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.46□□□□□ -0.41
HDGFL3-201ENST00000299633 MPHOSPH8Q99549 860 aa12.46□□□□□ -0.41
HDGFL3-201ENST00000299633 GABPB2Q8TAK5 448 aaPredicted RBP12.46□□□□□ -0.41
HDGFL3-201ENST00000299633 KIF21AQ7Z4S6 1674 aa12.46□□□□□ -0.41
HDGFL3-201ENST00000299633 GJC1P36383 396 aa12.46□□□□□ -0.41
HDGFL3-201ENST00000299633 CLTAP09496 248 aa12.46□□□□□ -0.41
HDGFL3-201ENST00000299633 RBM5P52756 815 aaKnown RBP eCLIP12.46□□□□□ -0.41
HDGFL3-201ENST00000299633 TSC22D3Q99576 134 aa12.46□□□□□ -0.41
HDGFL3-201ENST00000299633 NUCB1Q02818 461 aa12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 HDAC9Q9UKV0 1011 aa12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 RPSAP08865 295 aaKnown RBP12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 SSRP1Q08945 709 aaKnown RBP12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 RASA3Q14644 834 aa12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 CCDC85AQ96PX6 553 aaPredicted RBP12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 NEK2P51955 445 aa12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 ATP6V0A2Q9Y487 856 aa12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 MAP3K1Q13233 1512 aa12.46□□□□□ -0.42
HDGFL3-201ENST00000299633 STX6O43752 255 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 HS1BP3Q53T59 392 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 CROCCP2Q86T23 111 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 CEP19Q96LK0 163 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 SLC4A1P02730 911 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 ERO1AQ96HE7 468 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 BAG5Q9UL15 447 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 STK10O94804 968 aaKnown RBP12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 PSMD7P51665 324 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 CCDC152Q4G0S7 254 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 MAP7D3Q8IWC1 876 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 NEK1Q96PY6 1258 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 MMRN2Q9H8L6 949 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 DDX41Q9UJV9 622 aaKnown RBP12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 MYH1P12882 1939 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 MYH4Q9Y623 1939 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 LRGUKQ96M69 825 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 ANKRD20A3Q5VUR7 823 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 CACTINQ8WUQ7 758 aaKnown RBP12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 MSANTD4Q8NCY6 345 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 N4BP2L2Q92802 583 aaPredicted RBP12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 HHATQ5VTY9 493 aa12.45□□□□□ -0.42
HDGFL3-201ENST00000299633 CCDC82Q8N4S0 544 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 ZBBXA8MT70 800 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 TBCAO75347 108 aaKnown RBP12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 IGHDP01880 384 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 RPS6KA2Q15349 733 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 HEATR3Q7Z4Q2 680 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 CCDC42Q96M95 316 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 MED4Q9NPJ6 270 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 RANBP1P43487 201 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 KARSQ15046 597 aaKnown RBP12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 CNGA4Q8IV77 575 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 PIP4K2CQ8TBX8 421 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 TEKT2Q9UIF3 430 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 SYKP43405 635 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 ARID5AQ03989 594 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 TUBB2AQ13885 445 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 CCDC93Q567U6 631 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 TUBB2BQ9BVA1 445 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 RBSNQ9H1K0 784 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 BLVRAP53004 296 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 ARHGAP44Q17R89 818 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 ANKRD20A4Q4UJ75 823 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 ANKRD20A8PQ5CZ79 823 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 ANKRD20A2Q5SQ80 823 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 ANKRD20A1Q5TYW2 823 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 TSHZ3Q63HK5 1081 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 LZTFL1Q9NQ48 299 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 TRIM27P14373 513 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 TATP17735 454 aaPredicted RBP12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 TMCO5AQ8N6Q1 288 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 RAPGEF6Q8TEU7 1601 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 GJB2P29033 226 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 GNAT3A8MTJ3 354 aa12.44□□□□□ -0.42
HDGFL3-201ENST00000299633 CHMP4BP1P59074 171 aa12.43□□□□□ -0.42
HDGFL3-201ENST00000299633 NEK11Q8NG66 645 aa12.43□□□□□ -0.42
HDGFL3-201ENST00000299633 CABS1Q96KC9 395 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms