RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 WT1P19544 449 aaPredicted RBP7.04□□□□□ -1.28
VCL-207ENST00000624354 GPR6P46095 362 aaPredicted RBP7.04□□□□□ -1.28
VCL-207ENST00000624354 RPL8P62917 257 aaKnown RBP7.04□□□□□ -1.28
VCL-207ENST00000624354 FAM216BQ8N7L0 139 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 GRAMD2BQ96HH9 432 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 TMEM191AQ9H0A3 160 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 LINC00574Q9H8X3 128 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 ZNRD1Q9P1U0 126 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 PSMB11A5LHX3 300 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 PYYP10082 97 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 GPR183P32249 361 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 C10orf113Q5VZT2 155 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 UFSP1Q6NVU6 142 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 NDUFA4L2Q9NRX3 87 aa7.04□□□□□ -1.28
VCL-207ENST00000624354 PEX7O00628 323 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 KLF5Q13887 457 aaPredicted RBP7.03□□□□□ -1.28
VCL-207ENST00000624354 ZNF788Q6ZQV5 615 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 NUP35Q8NFH5 326 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 SNRNP40Q96DI7 357 aaKnown RBP7.03□□□□□ -1.28
VCL-207ENST00000624354 PPIAL4DF5H284 164 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 HLA-DRB1P01911 266 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 HIST1H1EP10412 219 aaKnown RBP7.03□□□□□ -1.28
VCL-207ENST00000624354 REG1BP48304 166 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 IGFL2Q6UWQ7 119 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 MBD6Q96DN6 1003 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 MRPL20Q9BYC9 149 aaKnown RBP7.03□□□□□ -1.28
VCL-207ENST00000624354 SCRT2Q9NQ03 307 aa7.03□□□□□ -1.28
VCL-207ENST00000624354 MBD3L4A6NDZ8 208 aaPredicted RBP7.02□□□□□ -1.28
VCL-207ENST00000624354 MBD3L3A6NE82 208 aaPredicted RBP7.02□□□□□ -1.28
VCL-207ENST00000624354 MBD3L5A6NJ08 208 aaPredicted RBP7.02□□□□□ -1.28
VCL-207ENST00000624354 SYS1-DBNDD2H3BUS1 97 aa7.02□□□□□ -1.28
VCL-207ENST00000624354 SCGB1A1P11684 91 aa7.02□□□□□ -1.28
VCL-207ENST00000624354 SEC11AP67812 179 aa7.02□□□□□ -1.28
VCL-207ENST00000624354 FAM162BQ5T6X4 162 aa7.02□□□□□ -1.28
VCL-207ENST00000624354 ZNF329Q86UD4 541 aa7.02□□□□□ -1.28
VCL-207ENST00000624354 MBD3L2Q8NHZ7 208 aaPredicted RBP7.02□□□□□ -1.28
VCL-207ENST00000624354 NPIPB3Q92617 1050 aa7.02□□□□□ -1.28
VCL-207ENST00000624354 C1RLQ9NZP8 487 aa7.02□□□□□ -1.28
VCL-207ENST00000624354 CSMD1Q96PZ7 3565 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 IGHV1-46P01743 117 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 HTR1DP28221 377 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 SUB1P53999 127 aaKnown RBP eCLIP7.02□□□□□ -1.29
VCL-207ENST00000624354 TCTAP57738 103 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 PLP1P60201 277 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 ZNF833PQ6ZTB9 187 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 RBMXL3Q8N7X1 1067 aaKnown RBP7.02□□□□□ -1.29
VCL-207ENST00000624354 FLYWCH2Q96CP2 140 aaKnown RBP7.02□□□□□ -1.29
VCL-207ENST00000624354 LINC00312Q9Y6C7 94 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 TNCP24821 2201 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 TCRBV4S1A1TA0A5B7 111 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 HIGD1CA8MV81 97 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 INS-IGF2F8WCM5 200 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 CRXO43186 299 aaPredicted RBP7.02□□□□□ -1.29
VCL-207ENST00000624354 PPIAL4GP0DN37 164 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 CAMPP49913 170 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 ZNF474Q6S9Z5 364 aaPredicted RBP7.02□□□□□ -1.29
VCL-207ENST00000624354 SEM1Q6ZVN7 128 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 NEGR1Q7Z3B1 354 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 VSTM2AQ8TAG5 236 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 TACC2O95359 2948 aa7.02□□□□□ -1.29
VCL-207ENST00000624354 K7EP34 96 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 LEPROTL1O95214 131 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 AZU1P20160 251 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 UQCRFS1P47985 274 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 SSBP2P81877 361 aaPredicted RBP7.01□□□□□ -1.29
VCL-207ENST00000624354 SCGB2A2Q13296 93 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 BPIFA4PQ86YQ2 179 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 MS4A6AQ9H2W1 248 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 INTS1Q8N201 2190 aaKnown RBP7.01□□□□□ -1.29
VCL-207ENST00000624354 C9orf118A6NHY6 69 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 SH2D7A6NKC9 451 aaPredicted RBP7.01□□□□□ -1.29
VCL-207ENST00000624354 KLK10O43240 276 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 OR2J3O76001 311 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 C3orf36Q3SXR2 165 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 TMEM177Q53S58 311 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 TMEM97Q5BJF2 176 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 GDF5OSQ5U4N7 250 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 PATE2Q6UY27 113 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 ATP5L2Q7Z4Y8 100 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 PDPNQ86YL7 162 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 STXBP6Q8NFX7 210 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 OR5AN1Q8NGI8 311 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 OR4C13Q8NGP0 309 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 OR2K2Q8NGT1 345 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 TMEM167AQ8TBQ9 72 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 SIGMAR1Q99720 223 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 SSBP4Q9BWG4 385 aaPredicted RBP7.01□□□□□ -1.29
VCL-207ENST00000624354 SMPXQ9UHP9 88 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 CUBNO60494 3623 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 E7EUB6 86 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 H3BUT2 72 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 IGHV3-48P01763 117 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 WT1-ASQ06250 92 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 SMAGPQ0VAQ4 97 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 DEFB109BQ30KR1 87 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 LINC00305Q7Z4B0 112 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 FXYD5Q96DB9 178 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 GTSF1LQ9H1H1 148 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 SSUH2Q9Y2M2 353 aa7.01□□□□□ -1.29
VCL-207ENST00000624354 A6NDN8 102 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 151.6 ms