RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TRGV9Q99603 122 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 RBKSQ9H477 322 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 XCL2Q9UBD3 114 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 V9GYH0 126 aa9.79□□□□□ -0.84
TRIM28-211ENST00000597968 PITX3O75364 302 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 MED6O75586 246 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 GGNBP1Q5YKI7 109 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 POM121L12Q8N7R1 296 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 OR1S1Q8NH92 325 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 PBDC1Q9BVG4 233 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 TMED3Q9Y3Q3 217 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 RFNGQ9Y644 331 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 DNAH2Q9P225 4427 aa9.78□□□□□ -0.84
TRIM28-211ENST00000597968 IGKV1D-37A0A075B6S9 117 aa9.77□□□□□ -0.85
TRIM28-211ENST00000597968 SOCS3O14543 225 aa9.77□□□□□ -0.85
TRIM28-211ENST00000597968 TOMM5Q8N4H5 51 aa9.77□□□□□ -0.85
TRIM28-211ENST00000597968 OR4D5Q8NGN0 318 aa9.77□□□□□ -0.85
TRIM28-211ENST00000597968 COQ8AQ8NI60 647 aa9.77□□□□□ -0.85
TRIM28-211ENST00000597968 GPR82Q96P67 336 aa9.77□□□□□ -0.85
TRIM28-211ENST00000597968 SLC25A21Q9BQT8 299 aaPredicted RBP9.77□□□□□ -0.85
TRIM28-211ENST00000597968 CELA1Q9UNI1 258 aa9.77□□□□□ -0.85
TRIM28-211ENST00000597968 FAT2Q9NYQ8 4349 aa9.77□□□□□ -0.85
TRIM28-211ENST00000597968 ZNF90Q03938 601 aa9.76□□□□□ -0.85
TRIM28-211ENST00000597968 EBLN2Q6P2I7 272 aa9.76□□□□□ -0.85
TRIM28-211ENST00000597968 THAP8Q8NA92 274 aa9.76□□□□□ -0.85
TRIM28-211ENST00000597968 RBM38Q9H0Z9 239 aaKnown RBP9.76□□□□□ -0.85
TRIM28-211ENST00000597968 RPRMQ9NS64 109 aa9.76□□□□□ -0.85
TRIM28-211ENST00000597968 GOLT1BQ9Y3E0 138 aa9.76□□□□□ -0.85
TRIM28-211ENST00000597968 AGRNO00468 2067 aa9.76□□□□□ -0.85
TRIM28-211ENST00000597968 VAMP1P23763 118 aa9.75□□□□□ -0.85
TRIM28-211ENST00000597968 S100A5P33763 92 aa9.75□□□□□ -0.85
TRIM28-211ENST00000597968 GALR1P47211 349 aa9.75□□□□□ -0.85
TRIM28-211ENST00000597968 PSG9Q00887 426 aa9.75□□□□□ -0.85
TRIM28-211ENST00000597968 LGALS9BQ3B8N2 356 aa9.75□□□□□ -0.85
TRIM28-211ENST00000597968 CCDC190Q86UF4 302 aa9.75□□□□□ -0.85
TRIM28-211ENST00000597968 OR8I2Q8N0Y5 310 aa9.75□□□□□ -0.85
TRIM28-211ENST00000597968 ZNF709Q8N972 641 aa9.75□□□□□ -0.85
TRIM28-211ENST00000597968 WDR12Q9GZL7 423 aaKnown RBP9.75□□□□□ -0.85
TRIM28-211ENST00000597968 A8MTW9 85 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 IAPPP10997 89 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 LYZP61626 148 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 B2MP61769 119 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 GSG1LQ6UXU4 331 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 S100A7AQ86SG5 101 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 PPP1R14BQ96C90 147 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 LINC00052Q96N35 136 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 NIPSNAP3BQ9BS92 247 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 DKK2Q9UBU2 259 aa9.74□□□□□ -0.85
TRIM28-211ENST00000597968 A0A0J9YX75 114 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 SYNGR2O43760 224 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 IFNA21P01568 189 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 HBE1P02100 147 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 UBE2MP61081 183 aaKnown RBP9.73□□□□□ -0.85
TRIM28-211ENST00000597968 PPP1R1AQ13522 171 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 RNF212Q495C1 297 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 GDF5OSQ5U4N7 250 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 BPIFCQ8NFQ6 507 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 OR4B1Q8NGF8 309 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 OR1B1Q8NGR6 318 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 MAGT1Q9H0U3 335 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 PAIP2BQ9ULR5 123 aaKnown RBP9.73□□□□□ -0.85
TRIM28-211ENST00000597968 RNF24Q9Y225 148 aa9.73□□□□□ -0.85
TRIM28-211ENST00000597968 DNAH17Q9UFH2 4485 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 IGKV1OR2-108A0A075B7D4 117 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 LINC00854A0A1B0GVQ3 168 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 PRSS46E5RG02 174 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 DUSP14O95147 198 aaKnown RBP9.72□□□□□ -0.85
TRIM28-211ENST00000597968 SFT2D2O95562 160 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 HOXB5P09067 269 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 FAM3BP58499 235 aaPredicted RBP9.72□□□□□ -0.85
TRIM28-211ENST00000597968 BAK1Q16611 211 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 RRN3P1Q2M238 152 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 C16orf92Q96LL3 132 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 SRRQ9GZT4 340 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 DOK5Q9P104 306 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 KIAA1109Q2LD37 5005 aa9.72□□□□□ -0.85
TRIM28-211ENST00000597968 ZNF98A6NK75 572 aa9.71□□□□□ -0.86
TRIM28-211ENST00000597968 OR2F1Q13607 317 aa9.71□□□□□ -0.86
TRIM28-211ENST00000597968 FAM78BQ5VT40 261 aa9.71□□□□□ -0.86
TRIM28-211ENST00000597968 IGF2BP2-AS1Q96M15 143 aa9.71□□□□□ -0.86
TRIM28-211ENST00000597968 FLVCR2Q9UPI3 526 aa9.71□□□□□ -0.86
TRIM28-211ENST00000597968 PKHD1P08F94 4074 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 A0A1B0GVY2 172 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 WRBO00258 174 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 IGKV3-20P01619 116 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 MED14OSP0DP75 135 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 TSPOP30536 169 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 SPANXN2Q5MJ10 180 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 FAM222AQ5U5X8 452 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 ZNF767PQ75MW2 155 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 TMEM144Q7Z5S9 345 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 C1orf158Q8N1D5 194 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 C15orf53Q8NAA6 179 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 C7orf50Q9BRJ6 194 aaKnown RBP9.7□□□□□ -0.86
TRIM28-211ENST00000597968 TMEM147Q9BVK8 224 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 SLC35B3Q9H1N7 401 aa9.7□□□□□ -0.86
TRIM28-211ENST00000597968 STRAPQ9Y3F4 350 aaKnown RBP9.7□□□□□ -0.86
TRIM28-211ENST00000597968 IGHV3OR16-12A0A075B7B8 117 aa9.69□□□□□ -0.86
TRIM28-211ENST00000597968 LOC102723971A0A1B0GUV8 181 aa9.69□□□□□ -0.86
TRIM28-211ENST00000597968 FNDC10F2Z333 226 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms