RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RTL8CO15255 209 aa15.07■□□□□ 0
VPS53-216ENST00000574029 SPART-AS1P0CW21 52 aa15.07■□□□□ 0
VPS53-216ENST00000574029 SULT1A3P0DMM9 295 aa15.07■□□□□ 0
VPS53-216ENST00000574029 SULT1A4P0DMN0 295 aa15.07■□□□□ 0
VPS53-216ENST00000574029 PPP1R1AQ13522 171 aa15.07■□□□□ 0
VPS53-216ENST00000574029 GDF5OSQ5U4N7 250 aa15.07■□□□□ 0
VPS53-216ENST00000574029 LYZL2Q7Z4W2 148 aa15.07■□□□□ 0
VPS53-216ENST00000574029 RNF125Q96EQ8 232 aa15.07■□□□□ 0
VPS53-216ENST00000574029 DNAH2Q9P225 4427 aa15.06■□□□□ 0
VPS53-216ENST00000574029 TMEM189A5PLL7 270 aa15.06■□□□□ 0
VPS53-216ENST00000574029 PRSS29PA6NIE9 313 aa15.06■□□□□ 0
VPS53-216ENST00000574029 LYRM1O43325 122 aa15.06■□□□□ 0
VPS53-216ENST00000574029 VAMP1P23763 118 aa15.06■□□□□ 0
VPS53-216ENST00000574029 NUP62P37198 522 aaPredicted RBP15.06■□□□□ 0
VPS53-216ENST00000574029 WDR12Q9GZL7 423 aaKnown RBP15.06■□□□□ 0
VPS53-216ENST00000574029 SAV1Q9H4B6 383 aaPredicted RBP15.06■□□□□ 0
VPS53-216ENST00000574029 U3KQ87 197 aa15.06■□□□□ 0
VPS53-216ENST00000574029 IFNA10P01566 189 aa15.05■□□□□ -0
VPS53-216ENST00000574029 ZNF846Q147U1 533 aa15.05■□□□□ -0
VPS53-216ENST00000574029 LGALS9BQ3B8N2 356 aa15.05■□□□□ -0
VPS53-216ENST00000574029 OR8G2PQ6IF36 304 aa15.05■□□□□ -0
VPS53-216ENST00000574029 CLUHP3Q96NS8 147 aa15.05■□□□□ -0
VPS53-216ENST00000574029 HSPB7Q9UBY9 170 aa15.05■□□□□ -0
VPS53-216ENST00000574029 FLVCR2Q9UPI3 526 aa15.05■□□□□ -0
VPS53-216ENST00000574029 M0R2N4 97 aa15.04■□□□□ -0
VPS53-216ENST00000574029 MED14OSP0DP75 135 aa15.04■□□□□ -0
VPS53-216ENST00000574029 DEFB1P60022 68 aa15.04■□□□□ -0
VPS53-216ENST00000574029 SMCO1Q147U7 214 aa15.04■□□□□ -0
VPS53-216ENST00000574029 FOXI2Q6ZQN5 318 aa15.04■□□□□ -0
VPS53-216ENST00000574029 PFDN2Q9UHV9 154 aa15.04■□□□□ -0
VPS53-216ENST00000574029 C9orf170A2RU37 121 aa15.03■□□□□ -0
VPS53-216ENST00000574029 SOCS3O14543 225 aa15.03■□□□□ -0
VPS53-216ENST00000574029 IGKV3-20P01619 116 aa15.03■□□□□ -0
VPS53-216ENST00000574029 SLC25A6P12236 298 aa15.03■□□□□ -0
VPS53-216ENST00000574029 FXYD7P58549 80 aa15.03■□□□□ -0
VPS53-216ENST00000574029 ZNF709Q8N972 641 aa15.03■□□□□ -0
VPS53-216ENST00000574029 DTD1Q8TEA8 209 aa15.03■□□□□ -0
VPS53-216ENST00000574029 FAM210BQ96KR6 192 aa15.03■□□□□ -0
VPS53-216ENST00000574029 LINC00052Q96N35 136 aa15.03■□□□□ -0
VPS53-216ENST00000574029 PBDC1Q9BVG4 233 aa15.03■□□□□ -0
VPS53-216ENST00000574029 RBKSQ9H477 322 aa15.03■□□□□ -0
VPS53-216ENST00000574029 RFNGQ9Y644 331 aa15.03■□□□□ -0
VPS53-216ENST00000574029 DNAH17Q9UFH2 4485 aa15.03■□□□□ -0
VPS53-216ENST00000574029 IGKV1D-37A0A075B6S9 117 aa15.02■□□□□ -0
VPS53-216ENST00000574029 OR4E1P0C645 316 aa15.02■□□□□ -0
VPS53-216ENST00000574029 ID1P41134 155 aa15.02■□□□□ -0
VPS53-216ENST00000574029 PSMB3P49720 205 aa15.02■□□□□ -0
VPS53-216ENST00000574029 EMP1P54849 157 aa15.02■□□□□ -0
VPS53-216ENST00000574029 ATP5IP56385 69 aaPredicted RBP15.02■□□□□ -0
VPS53-216ENST00000574029 ZNF90Q03938 601 aa15.02■□□□□ -0
VPS53-216ENST00000574029 DKK2Q9UBU2 259 aa15.02■□□□□ -0
VPS53-216ENST00000574029 TMED3Q9Y3Q3 217 aa15.02■□□□□ -0
VPS53-216ENST00000574029 IGHV3OR16-12A0A075B7B8 117 aa15.01□□□□□ -0.01
VPS53-216ENST00000574029 TEX48A0A1B0GUV7 120 aa15.01□□□□□ -0.01
VPS53-216ENST00000574029 ZFP92A6NM28 416 aa15.01□□□□□ -0.01
VPS53-216ENST00000574029 PITX3O75364 302 aa15.01□□□□□ -0.01
VPS53-216ENST00000574029 TCRBP04435 133 aa15.01□□□□□ -0.01
VPS53-216ENST00000574029 GPX4P36969 197 aaPredicted RBP15.01□□□□□ -0.01
VPS53-216ENST00000574029 ASAH1Q13510 395 aa15.01□□□□□ -0.01
VPS53-216ENST00000574029 GAMTQ14353 236 aa15.01□□□□□ -0.01
VPS53-216ENST00000574029 C1orf194Q5T5A4 169 aa15.01□□□□□ -0.01
VPS53-216ENST00000574029 UPK1BO75841 260 aa15□□□□□ -0.01
VPS53-216ENST00000574029 IFNA21P01568 189 aa15□□□□□ -0.01
VPS53-216ENST00000574029 ANXA7P20073 488 aaKnown RBP15□□□□□ -0.01
VPS53-216ENST00000574029 SPATA31B1PQ5VZV4 182 aa15□□□□□ -0.01
VPS53-216ENST00000574029 NIPSNAP3BQ9BS92 247 aa15□□□□□ -0.01
VPS53-216ENST00000574029 SLC35B3Q9H1N7 401 aa15□□□□□ -0.01
VPS53-216ENST00000574029 PKHD1P08F94 4074 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 PAX9P55771 341 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 OXA1LQ15070 435 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 FAM222AQ5U5X8 452 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 MZT2BQ6NZ67 158 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 Q6ZR54 194 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 OR4B1Q8NGF8 309 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 COQ8AQ8NI60 647 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 SLC35E1Q96K37 410 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 C20orf85Q9H1P6 137 aa14.99□□□□□ -0.01
VPS53-216ENST00000574029 FABP1P07148 127 aa14.98□□□□□ -0.01
VPS53-216ENST00000574029 C4orf46Q504U0 113 aa14.98□□□□□ -0.01
VPS53-216ENST00000574029 UBE2DNLQ8IWF7 75 aa14.98□□□□□ -0.01
VPS53-216ENST00000574029 C1orf158Q8N1D5 194 aa14.98□□□□□ -0.01
VPS53-216ENST00000574029 OR1S1Q8NH92 325 aa14.98□□□□□ -0.01
VPS53-216ENST00000574029 PLA2G2EQ9NZK7 142 aa14.98□□□□□ -0.01
VPS53-216ENST00000574029 GOLT1BQ9Y3E0 138 aa14.98□□□□□ -0.01
VPS53-216ENST00000574029 SNRPGP15A8MWD9 76 aa14.97□□□□□ -0.01
VPS53-216ENST00000574029 ISLRO14498 428 aa14.97□□□□□ -0.01
VPS53-216ENST00000574029 LYZP61626 148 aa14.97□□□□□ -0.01
VPS53-216ENST00000574029 PSG9Q00887 426 aa14.97□□□□□ -0.01
VPS53-216ENST00000574029 IFITM3Q01628 133 aa14.97□□□□□ -0.01
VPS53-216ENST00000574029 FAM78BQ5VT40 261 aa14.97□□□□□ -0.01
VPS53-216ENST00000574029 GGNBP1Q5YKI7 109 aa14.97□□□□□ -0.01
VPS53-216ENST00000574029 GSG1LQ6UXU4 331 aa14.97□□□□□ -0.01
VPS53-216ENST00000574029 IGLV2-18A0A075B6J9 118 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 A0A0J9YX75 114 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 FAM240BA0A1B0GVZ2 78 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 F6UB75 175 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 HOXB5P09067 269 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 RNF212Q495C1 297 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 EBLN2Q6P2I7 272 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 MITD1Q8WV92 249 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms