RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 PTTG1IPP53801 180 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 STXBP6Q8NFX7 210 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 ZNF596Q8TC21 504 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 TPPP3Q9BW30 176 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 C20orf202A1L168 122 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 RBP4P02753 201 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 COX7A1P24310 79 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 COL8A1P27658 744 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 LOXP28300 417 aaPredicted RBP13.68□□□□□ -0.22
VPS53-215ENST00000573028 CA7P43166 264 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 Q6ZS92 163 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 OR8B3Q8NGG8 313 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 A0A0G2JNJ9 132 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 C2orf70A6NJV1 201 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 LINC00614P0C842 121 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 CEACAM8P31997 349 aaPredicted RBP13.68□□□□□ -0.22
VPS53-215ENST00000573028 MYCNOSP40205 109 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 GOLT1AQ6ZVE7 132 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 C5orf17Q8NAS9 161 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 OR4A5Q8NH83 315 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 URB1-AS1Q96HZ7 61 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 TMEM70Q9BUB7 260 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 Q9UFV3 132 aa13.68□□□□□ -0.22
VPS53-215ENST00000573028 LYNX1G3V0Z9 82 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 CEACAM4O75871 244 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 TCRAP04437 139 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 LYNX1P0DP58 116 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 ETFRF1Q6IPR1 90 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 NUP37Q8NFH4 326 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 PMCHL2Q9BQD1 86 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 ZZEF1O43149 2961 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 hDV102S1A0JD36 115 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 OR4C46A6NHA9 309 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 KLK10O43240 276 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 PLGLAQ15195 96 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 C3orf36Q3SXR2 165 aa13.67□□□□□ -0.22
VPS53-215ENST00000573028 OR2J3O76001 311 aa13.66□□□□□ -0.22
VPS53-215ENST00000573028 FAM57AQ8TBR7 257 aa13.66□□□□□ -0.22
VPS53-215ENST00000573028 CRYABP02511 175 aaKnown RBP13.66□□□□□ -0.22
VPS53-215ENST00000573028 IGHV1-8P0DP01 117 aa13.66□□□□□ -0.22
VPS53-215ENST00000573028 MC5RP33032 325 aa13.66□□□□□ -0.22
VPS53-215ENST00000573028 KLF5Q13887 457 aaPredicted RBP13.66□□□□□ -0.22
VPS53-215ENST00000573028 FBXL15Q9H469 300 aa13.66□□□□□ -0.22
VPS53-215ENST00000573028 A0A1B0GXF2 115 aa13.66□□□□□ -0.22
VPS53-215ENST00000573028 INSIG2Q9Y5U4 225 aa13.66□□□□□ -0.22
VPS53-215ENST00000573028 INS-IGF2F8WCM5 200 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 LEPROTL1O95214 131 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 PSG1P11464 419 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 PRSS33Q8NF86 280 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 IGFBPL1Q8WX77 278 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 HIGD1AQ9Y241 93 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 S4R3C0 116 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 MRGPRG-AS1Q2M3A8 158 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 ATP5L2Q7Z4Y8 100 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 MED13LQ71F56 2210 aa13.65□□□□□ -0.22
VPS53-215ENST00000573028 PRRG2O14669 202 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 THBDP07204 575 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 GP9P14770 177 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 LGALS7P47929 136 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 RBM14Q96PK6 669 aaKnown RBP13.64□□□□□ -0.23
VPS53-215ENST00000573028 MLST8Q9BVC4 326 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 IGHV1-24A0A0C4DH33 117 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 TOMM40O96008 361 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 FMC1Q96HJ9 113 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 TRGV9Q99603 122 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 A0A1W2PRD5 423 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 A0A1W2PRF3 423 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 A0A1W2PRM7 423 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 CCL25O15444 150 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 RBPMS2Q6ZRY4 209 aaKnown RBP13.64□□□□□ -0.23
VPS53-215ENST00000573028 RNASE6Q93091 150 aaKnown RBP13.64□□□□□ -0.23
VPS53-215ENST00000573028 TMEM133Q9H2Q1 129 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 KLF12Q9Y4X4 402 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 WNK2Q9Y3S1 2297 aa13.64□□□□□ -0.23
VPS53-215ENST00000573028 TMEM155Q4W5P6 130 aa13.63□□□□□ -0.23
VPS53-215ENST00000573028 IGFL3Q6UXB1 125 aa13.63□□□□□ -0.23
VPS53-215ENST00000573028 C8orf46Q8TAG6 207 aa13.63□□□□□ -0.23
VPS53-215ENST00000573028 C17orf77Q96MU5 243 aa13.63□□□□□ -0.23
VPS53-215ENST00000573028 IGHV2-26A0A0B4J1V2 119 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 LTAP01374 205 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 HTR1DP28221 377 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 SIGLEC9Q9Y336 463 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 CNIH1O95406 144 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 TMEM116Q8NCL8 245 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 SRSF12Q8WXF0 261 aaKnown RBP13.62□□□□□ -0.23
VPS53-215ENST00000573028 MRPS16Q9Y3D3 137 aaKnown RBP13.62□□□□□ -0.23
VPS53-215ENST00000573028 CRYGCP07315 174 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 PPP1R27Q86WC6 154 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 LINC00311Q8N616 119 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 RASL11BQ9BPW5 248 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 PRSS22Q9GZN4 317 aa13.62□□□□□ -0.23
VPS53-215ENST00000573028 CSMD1Q96PZ7 3565 aa13.61□□□□□ -0.23
VPS53-215ENST00000573028 SYS1-DBNDD2H3BUS1 97 aa13.61□□□□□ -0.23
VPS53-215ENST00000573028 MPV17L2Q567V2 206 aa13.61□□□□□ -0.23
VPS53-215ENST00000573028 SLC25A39Q9BZJ4 359 aaPredicted RBP13.61□□□□□ -0.23
VPS53-215ENST00000573028 CACNA1BQ00975 2339 aa13.61□□□□□ -0.23
VPS53-215ENST00000573028 LRBAP50851 2863 aa13.61□□□□□ -0.23
VPS53-215ENST00000573028 TLN1Q9Y490 2541 aaKnown RBP13.61□□□□□ -0.23
VPS53-215ENST00000573028 C19orf71A6NCJ1 209 aa13.61□□□□□ -0.23
VPS53-215ENST00000573028 VSTM5A8MXK1 200 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms