RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PCNPQ8WW12 178 aaKnown RBP11.16□□□□□ -0.62
SHMT2-208ENST00000553868 MBD3L1Q8WWY6 194 aa11.16□□□□□ -0.62
SHMT2-208ENST00000553868 CCDC140Q96MF4 163 aa11.16□□□□□ -0.62
SHMT2-208ENST00000553868 MRPL32Q9BYC8 188 aaKnown RBP11.16□□□□□ -0.62
SHMT2-208ENST00000553868 KLK15Q9H2R5 256 aa11.16□□□□□ -0.62
SHMT2-208ENST00000553868 VSIRQ9H7M9 311 aa11.16□□□□□ -0.62
SHMT2-208ENST00000553868 DNAJC4Q9NNZ3 241 aa11.16□□□□□ -0.62
SHMT2-208ENST00000553868 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.15□□□□□ -0.62
SHMT2-208ENST00000553868 TRAV1-1A0A0B4J248 108 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 MAP1LC3B2A6NCE7 125 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 F8W735 103 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-208ENST00000553868 C3orf84H3BNL1 204 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 TGOLN2O43493 480 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 CTSGP08311 255 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 PSG1P11464 419 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 GATA2P23769 480 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-208ENST00000553868 TAS2R45P59539 299 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 C10orf113Q5VZT2 155 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 ZNF343Q6P1L6 599 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 IL34Q6ZMJ4 242 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 RNF152Q8N8N0 203 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 SFT2D1Q8WV19 159 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 MAP1LC3BQ9GZQ8 125 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 HRH4Q9H3N8 390 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 SLC25A22Q9H936 323 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 RNF24Q9Y225 148 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 RYR1P21817 5038 aa11.15□□□□□ -0.62
SHMT2-208ENST00000553868 OR2C1O95371 312 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 OR5G3P0C626 314 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 IGLL1P15814 213 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 ARL3P36405 182 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 LYZP61626 148 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 KLHDC1Q8N7A1 406 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 OR1B1Q8NGR6 318 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 LYPD6BQ8NI32 183 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 RAB24Q969Q5 203 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 B9D2Q9BPU9 175 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 GNB4Q9HAV0 340 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 FUT9Q9Y231 359 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 STAB2Q8WWQ8 2551 aa11.14□□□□□ -0.63
SHMT2-208ENST00000553868 ORM2P19652 201 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 ZNF726P1Q15940 193 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 NSUN5P1Q3KNT7 163 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 GCSAMLQ5JQS6 135 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 CASC10Q5T4H9 136 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 FAM78BQ5VT40 261 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 LCN15Q6UWW0 184 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 OR5AU1Q8NGC0 362 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 MYOZ3Q8TDC0 251 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 MARC2Q969Z3 335 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 RNF125Q96EQ8 232 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 UBE2E2Q96LR5 201 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 TECRQ9NZ01 308 aaKnown RBP11.13□□□□□ -0.63
SHMT2-208ENST00000553868 DOK5Q9P104 306 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 HIGD1AQ9Y241 93 aa11.13□□□□□ -0.63
SHMT2-208ENST00000553868 LCE6AA0A183 80 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 BMPR1BO00238 502 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 CXorf1O96002 111 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 IFNA1P01562 189 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 IL4P05112 153 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 ADMP35318 185 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 PPT1P50897 306 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 KRTAP10-11P60412 298 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 KHDC3LQ587J8 217 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 COMMD7Q86VX2 200 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 ZNF491Q8N8L2 437 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 CHRDL1Q9BU40 450 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 PBDC1Q9BVG4 233 aa11.12□□□□□ -0.63
SHMT2-208ENST00000553868 PEF1Q9UBV8 284 aaKnown RBP11.12□□□□□ -0.63
SHMT2-208ENST00000553868 HUWE1Q7Z6Z7 4374 aaKnown RBP11.12□□□□□ -0.63
SHMT2-208ENST00000553868 GGCTO75223 188 aaKnown RBP11.11□□□□□ -0.63
SHMT2-208ENST00000553868 IGHV3-11P01762 117 aa11.11□□□□□ -0.63
SHMT2-208ENST00000553868 RPLP1P05386 114 aaKnown RBP11.11□□□□□ -0.63
SHMT2-208ENST00000553868 LGALS1P09382 135 aaKnown RBP11.11□□□□□ -0.63
SHMT2-208ENST00000553868 STAG3L2P0CL84 134 aa11.11□□□□□ -0.63
SHMT2-208ENST00000553868 STAG3L3P0CL85 134 aa11.11□□□□□ -0.63
SHMT2-208ENST00000553868 C8orf88P0DMB2 117 aa11.11□□□□□ -0.63
SHMT2-208ENST00000553868 STXBP6Q8NFX7 210 aa11.11□□□□□ -0.63
SHMT2-208ENST00000553868 TMEM37Q8WXS4 190 aa11.11□□□□□ -0.63
SHMT2-208ENST00000553868 SEPSECSQ9HD40 501 aaKnown RBP11.11□□□□□ -0.63
SHMT2-208ENST00000553868 PUS1Q9Y606 427 aaKnown RBP eCLIP11.11□□□□□ -0.63
SHMT2-208ENST00000553868 U3KQK5 164 aa11.11□□□□□ -0.63
SHMT2-208ENST00000553868 STARD9Q9P2P6 4700 aa11.11□□□□□ -0.63
SHMT2-208ENST00000553868 RAB19A4D1S5 217 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 ANKRD34BA5PLL1 514 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 TAGLN2P37802 199 aaKnown RBP11.1□□□□□ -0.63
SHMT2-208ENST00000553868 PSMB3P49720 205 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 KIAA0141Q14154 515 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-208ENST00000553868 C10orf99Q6UWK7 81 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 PATE2Q6UY27 113 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 PQLC2Q6ZP29 291 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 LCNL1Q6ZST4 164 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 LINC00305Q7Z4B0 112 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 MRPL27Q9P0M9 148 aaKnown RBP11.1□□□□□ -0.63
SHMT2-208ENST00000553868 RABAC1Q9UI14 185 aa11.1□□□□□ -0.63
SHMT2-208ENST00000553868 A0A1B0GV50 99 aa11.09□□□□□ -0.63
SHMT2-208ENST00000553868 NDUFA4O00483 81 aa11.09□□□□□ -0.63
SHMT2-208ENST00000553868 CDX1P47902 265 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-208ENST00000553868 PMS2P11Q13670 270 aa11.09□□□□□ -0.63
SHMT2-208ENST00000553868 UQCC3Q6UW78 93 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms