RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	TFPI2	P48307	235 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	INPP1	P49441	399 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	EIF2B2	P49770	351 aa	Known RBP	5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	FAM3B	P58499	235 aa	Predicted RBP	5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	KRTAP10-2	P60368	255 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	PPP1R1A	Q13522	171 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	APRG1	Q8IVJ8	170 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	GBGT1	Q8N5D6	347 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440		Q8WTZ3	238 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	LYST	Q99698	3801 aa		5.65	□□□□□ -1.5
SNHG1-223	ENST00000545440	RYR3	Q15413	4870 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	IGHV3-66	A0A0C4DH42	116 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	HELT	A6NFD8	242 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	KRTAP9-7	A8MTY7	169 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440		K7EQG2	157 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	DNASE2	O00115	360 aa	Predicted RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	MED6	O75586	246 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	NDUFB6	O95139	128 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	IFNA4	P05014	189 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	IL4	P05112	153 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	RPL35A	P18077	110 aa	Known RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	GPX4	P36969	197 aa	Predicted RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	NUP62	P37198	522 aa	Predicted RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	USF2	Q15853	346 aa	Predicted RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	BAK1	Q16611	211 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	LCE4A	Q5TA78	99 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	STXBP6	Q8NFX7	210 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	DCANP1	Q8TF63	244 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	RNF183	Q96D59	192 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	ACY3	Q96HD9	319 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	SLC35E1	Q96K37	410 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	CIB3	Q96Q77	187 aa	Predicted RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	SDHC	Q99643	169 aa	Predicted RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	C7orf50	Q9BRJ6	194 aa	Known RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	RABAC1	Q9UI14	185 aa		5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	DYNC2H1	Q8NCM8	4307 aa	Known RBP	5.64	□□□□□ -1.51
SNHG1-223	ENST00000545440	CENPX	A8MT69	81 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	MPTX1	A8MV57	137 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	FABP1	P07148	127 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	RD3L	P0DJH9	198 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	AP2S1	P53680	142 aa	Predicted RBP	5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	DEFB131A	P59861	70 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	RAB11A	P62491	216 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	DHRS2	Q13268	280 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	C16orf54	Q6UWD8	224 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	LYG2	Q86SG7	212 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	FAM24B	Q8N5W8	94 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	TMEM217	Q8N7C4	229 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	OR51G1	Q8NGK1	321 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	GATAD1	Q8WUU5	269 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	RNF125	Q96EQ8	232 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	CSTL1	Q9H114	145 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	NDUFA13	Q9P0J0	144 aa		5.63	□□□□□ -1.51
SNHG1-223	ENST00000545440	IGKV1D-37	A0A075B6S9	117 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440		A0A0J9YWU9	116 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	C9orf170	A2RU37	121 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	ZFP92	A6NM28	416 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	PRSS46	E5RG02	174 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	BUB3	O43684	328 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	SYNGR2	O43760	224 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	IAPP	P10997	89 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	PSG1	P11464	419 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	IL7	P13232	177 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	BTC	P35070	178 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	RPP30	P78346	268 aa	Known RBP	5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	GAMT	Q14353	236 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	CNPY1	Q3B7I2	92 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	TMEM41B	Q5BJD5	291 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	GGNBP1	Q5YKI7	109 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	LEMD1	Q68G75	181 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	OR8G2P	Q6IF36	304 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	COQ8A	Q8NI60	647 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	TRGV9	Q99603	122 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	TMPRSS5	Q9H3S3	457 aa		5.62	□□□□□ -1.51
SNHG1-223	ENST00000545440	NUPR2	A6NF83	97 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	CA1	P00915	261 aa	Predicted RBP	5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	HOXB5	P09067	269 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	OR4E1	P0C645	316 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	ZNF688	P0C7X2	276 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	SPP1	P10451	314 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	SNRPD3	P62318	126 aa	Known RBP	5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	MORN3	Q6PF18	240 aa	Predicted RBP	5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	SIGLEC15	Q6ZMC9	328 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	TRPT1	Q86TN4	253 aa	Known RBP	5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	STH	Q8IWL8	128 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	THAP8	Q8NA92	274 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	MAGT1	Q9H0U3	335 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	C11orf68	Q9H3H3	251 aa	Known RBP	5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	NRN1	Q9NPD7	142 aa		5.61	□□□□□ -1.51
SNHG1-223	ENST00000545440	IGKV1OR2-108	A0A075B7D4	117 aa		5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440		J3KRW8	73 aa		5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	WRB	O00258	174 aa		5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	ADAP1	O75689	374 aa		5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	CFD	P00746	253 aa	Predicted RBP	5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	IFNA21	P01568	189 aa		5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	ANXA7	P20073	488 aa	Known RBP	5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	EWSR1	Q01844	656 aa	Known RBP eCLIP	5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	ZNF90	Q03938	601 aa		5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	PSMG4	Q5JS54	123 aa		5.6	□□□□□ -1.51
SNHG1-223	ENST00000545440	C1orf194	Q5T5A4	169 aa		5.6	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms