RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 Q6ZRN7 208 aaPredicted RBP1.21□□□□□ -2.22
CD44-234ENST00000531873 KTN1-AS1Q86SY8 53 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 OR11H6Q8NGC7 330 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 DCANP1Q8TF63 244 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 PAIP2Q9BPZ3 127 aaKnown RBP1.21□□□□□ -2.22
CD44-234ENST00000531873 HSPB9Q9BQS6 159 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 DOHHQ9BU89 302 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 C9orf16Q9BUW7 83 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 KIFC1Q9BW19 673 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 TMEM106BQ9NUM4 274 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 ARMC1Q9NVT9 282 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 WDFY4Q6ZS81 3184 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 DOCK4Q8N1I0 1966 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 KIF24Q5T7B8 1368 aa1.21□□□□□ -2.22
CD44-234ENST00000531873 SLIT1O75093 1534 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 PRUNE2Q8WUY3 3088 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 MED13Q9UHV7 2174 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 CCDC18Q5T9S5 1454 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 MYH10P35580 1976 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 NF1P21359 2839 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 PAPPAQ13219 1627 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 HMSDA8MTL9 139 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 IBA57-AS1B1ANH7 110 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 PRB1P04280 392 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 IGKV1-16P04430 117 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 C8GP07360 202 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 PPP1R2P41236 205 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 FXYD2P54710 66 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 TMEM155Q4W5P6 130 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 SPANXN3Q5MJ09 141 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 PPP1R2P3Q6NXS1 205 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 DHRS4L2Q6PKH6 230 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 BPIFA4PQ86YQ2 179 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 PXT1Q8NFP0 134 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 PFN4Q8NHR9 129 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 MCFD2Q8NI22 146 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 SLC25A40Q8TBP6 338 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 BTF3L4Q96K17 158 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 PARVBQ9HBI1 364 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 ENY2Q9NPA8 101 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 IL20Q9NYY1 176 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 FAM32AQ9Y421 112 aaKnown RBP1.2□□□□□ -2.22
CD44-234ENST00000531873 ARL5AQ9Y689 179 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 CLIP1P30622 1438 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 DENND4CQ5VZ89 1909 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 CEP250Q9BV73 2442 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 COL5A3P25940 1745 aaPredicted RBP1.2□□□□□ -2.22
CD44-234ENST00000531873 USP34Q70CQ2 3546 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 OBSL1O75147 1896 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 ALPK2Q86TB3 2170 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 SYCP2Q9BX26 1530 aa1.2□□□□□ -2.22
CD44-234ENST00000531873 CLTCQ00610 1675 aaKnown RBP1.2□□□□□ -2.22
CD44-234ENST00000531873 GVINP1Q7Z2Y8 2422 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 HTTP42858 3142 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 MEIS3P1A6NDR6 274 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 BCL9O00512 1426 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 OR2B3O76000 313 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 CIAO1O76071 339 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 IFNA10P01566 189 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 TRGC1P0CF51 173 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 SMIM17P0DL12 118 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 PPIBP23284 216 aaKnown RBP1.19□□□□□ -2.22
CD44-234ENST00000531873 NFYAP23511 347 aaPredicted RBP1.19□□□□□ -2.22
CD44-234ENST00000531873 S100A5P33763 92 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 EIF2B2P49770 351 aaKnown RBP1.19□□□□□ -2.22
CD44-234ENST00000531873 SERPINB9P50453 376 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 RELAQ04206 551 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 ATRQ13535 2644 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 ARFGEF3Q5TH69 2177 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 TNS3Q68CZ2 1445 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 TENM4Q6N022 2769 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 Q6Q795 121 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 SLC36A1Q7Z2H8 476 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 CLVS1Q8IUQ0 354 aaPredicted RBP1.19□□□□□ -2.22
CD44-234ENST00000531873 C11orf40Q8WZ69 217 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 TMEM106AQ96A25 262 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 PCNX1Q96RV3 2341 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 NSD3Q9BZ95 1437 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 CCDC90BQ9GZT6 254 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 OPTCQ9UBM4 332 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 BAIAP2Q9UQB8 552 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 LHFPL6Q9Y693 200 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 ARHGAP5Q13017 1502 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 COL6A5A8TX70 2615 aa1.19□□□□□ -2.22
CD44-234ENST00000531873 FLNAP21333 2647 aaKnown RBP1.19□□□□□ -2.22
CD44-234ENST00000531873 PRXQ9BXM0 1461 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 SCN3AQ9NY46 2000 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 SPG11Q96JI7 2443 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.18□□□□□ -2.22
CD44-234ENST00000531873 IQGAP2Q13576 1575 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 ASPMQ8IZT6 3477 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 KDM6AO15550 1401 aaPredicted RBP1.18□□□□□ -2.22
CD44-234ENST00000531873 ARHGAP31Q2M1Z3 1444 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 SMG6Q86US8 1419 aaKnown RBP1.18□□□□□ -2.22
CD44-234ENST00000531873 VIRMAQ69YN4 1812 aaKnown RBP1.18□□□□□ -2.22
CD44-234ENST00000531873 CLDN25C9JDP6 229 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 OVOL1O14753 267 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 C1QBP02746 253 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 SHBGP04278 402 aa1.18□□□□□ -2.22
CD44-234ENST00000531873 IFI30P13284 250 aa1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms