RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 BRWD1Q9NSI6 2320 aa2.67□□□□□ -1.98
NUP54-215ENST00000514313 COL4A1P02462 1669 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 MED12LQ86YW9 2145 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 HEATR5BQ9P2D3 2071 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 TRAV12-1A0A0B4J245 112 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 CRHP06850 196 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 OGNP20774 298 aaKnown RBP2.66□□□□□ -1.98
NUP54-215ENST00000514313 KRTAP5-7Q6L8G8 165 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 C12orf29Q8N999 325 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 LINC00301Q8NCQ3 95 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 NPCDR1Q9BY65 106 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 SCN8AQ9UQD0 1980 aa2.66□□□□□ -1.98
NUP54-215ENST00000514313 MYOFQ9NZM1 2061 aa2.65□□□□□ -1.98
NUP54-215ENST00000514313 SBF1O95248 1867 aa2.65□□□□□ -1.98
NUP54-215ENST00000514313 SURF2Q15527 256 aaPredicted RBP2.65□□□□□ -1.99
NUP54-215ENST00000514313 LTC4SQ16873 150 aa2.65□□□□□ -1.99
NUP54-215ENST00000514313 EIF5AL1Q6IS14 154 aaKnown RBP2.65□□□□□ -1.99
NUP54-215ENST00000514313 UNQ6190/PRO20217Q6UXQ8 127 aa2.65□□□□□ -1.99
NUP54-215ENST00000514313 PLEKHB2Q96CS7 222 aa2.65□□□□□ -1.99
NUP54-215ENST00000514313 SDK1Q7Z5N4 2213 aa2.65□□□□□ -1.99
NUP54-215ENST00000514313 DOCK4Q8N1I0 1966 aa2.65□□□□□ -1.99
NUP54-215ENST00000514313 A8MWV9 139 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 TRGC2P03986 189 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 HLA-EP13747 358 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 FAM24BQ8N5W8 94 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 NUP35Q8NFH5 326 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 OR10K1Q8NGX5 313 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 C14orf132Q9NPU4 83 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 MED9Q9NWA0 146 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 UHRF1BP1Q6BDS2 1440 aa2.64□□□□□ -1.99
NUP54-215ENST00000514313 COL4A5P29400 1685 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 GPR31O00270 319 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 RAB4BP61018 213 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 B2MP61769 119 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 MYL5Q02045 173 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 DEFB119Q8N690 84 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 TEX47Q8TBZ9 253 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 POPDC3Q9HBV1 291 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 MYH2Q9UKX2 1941 aa2.63□□□□□ -1.99
NUP54-215ENST00000514313 SYNMO15061 1565 aa2.62□□□□□ -1.99
NUP54-215ENST00000514313 CXCL1P09341 107 aa2.62□□□□□ -1.99
NUP54-215ENST00000514313 DCUN1D2Q6PH85 259 aa2.62□□□□□ -1.99
NUP54-215ENST00000514313 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.62□□□□□ -1.99
NUP54-215ENST00000514313 OR2T35Q8NGX2 323 aa2.62□□□□□ -1.99
NUP54-215ENST00000514313 ATPIF1Q9UII2 106 aa2.62□□□□□ -1.99
NUP54-215ENST00000514313 MAP1LC3B2A6NCE7 125 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 IFNA14P01570 189 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 TMBIM6P55061 237 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 PPTC7Q8NI37 304 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 DYDC1Q8WWB3 177 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 LINC00467Q9BRT7 94 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 MAP1LC3BQ9GZQ8 125 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 CENPHQ9H3R5 247 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 MED11Q9P086 117 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 SMPXQ9UHP9 88 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 MYH3P11055 1940 aa2.61□□□□□ -1.99
NUP54-215ENST00000514313 IGKV3D-7A0A0C4DH55 119 aa2.6□□□□□ -1.99
NUP54-215ENST00000514313 IGKV3OR2-268A0A0C4DH90 116 aa2.6□□□□□ -1.99
NUP54-215ENST00000514313 IGKV2-29A2NJV5 120 aaPredicted RBP2.6□□□□□ -1.99
NUP54-215ENST00000514313 TLCD2A6NGC4 264 aa2.6□□□□□ -1.99
NUP54-215ENST00000514313 ARPP19P56211 112 aa2.6□□□□□ -1.99
NUP54-215ENST00000514313 CLECL1Q8IZS7 167 aa2.6□□□□□ -1.99
NUP54-215ENST00000514313 CARD19Q96LW7 228 aa2.6□□□□□ -1.99
NUP54-215ENST00000514313 OR52A1Q9UKL2 312 aa2.6□□□□□ -1.99
NUP54-215ENST00000514313 TAF1LQ8IZX4 1826 aa2.6□□□□□ -1.99
NUP54-215ENST00000514313 ODAMA1E959 279 aa2.59□□□□□ -1.99
NUP54-215ENST00000514313 CNBPP62633 177 aaKnown RBP2.59□□□□□ -1.99
NUP54-215ENST00000514313 MSMO1Q15800 293 aa2.59□□□□□ -1.99
NUP54-215ENST00000514313 TMEM78Q5T7P6 136 aa2.59□□□□□ -1.99
NUP54-215ENST00000514313 FKBP1CQ5VVH2 108 aa2.59□□□□□ -1.99
NUP54-215ENST00000514313 PATE2Q6UY27 113 aa2.59□□□□□ -1.99
NUP54-215ENST00000514313 OR4C6Q8NH72 309 aa2.59□□□□□ -1.99
NUP54-215ENST00000514313 TRBV6-8A0A0A6YYG3 113 aa2.58□□□□□ -2
NUP54-215ENST00000514313 A0A1B0GV72 72 aa2.58□□□□□ -2
NUP54-215ENST00000514313 B4DSR2 109 aa2.58□□□□□ -2
NUP54-215ENST00000514313 DHFRP00374 187 aa2.58□□□□□ -2
NUP54-215ENST00000514313 ROMO1P60602 79 aa2.58□□□□□ -2
NUP54-215ENST00000514313 C1orf137Q5JT78 98 aa2.58□□□□□ -2
NUP54-215ENST00000514313 C1orf140Q5VVS0 124 aa2.58□□□□□ -2
NUP54-215ENST00000514313 IFT20Q8IY31 132 aa2.58□□□□□ -2
NUP54-215ENST00000514313 RTL8AQ9BWD3 113 aa2.58□□□□□ -2
NUP54-215ENST00000514313 SOX21Q9Y651 276 aaPredicted RBP2.58□□□□□ -2
NUP54-215ENST00000514313 YTHDC2Q9H6S0 1430 aaKnown RBP2.58□□□□□ -2
NUP54-215ENST00000514313 CEP164Q9UPV0 1460 aa2.58□□□□□ -2
NUP54-215ENST00000514313 ALPK2Q86TB3 2170 aa2.57□□□□□ -2
NUP54-215ENST00000514313 HCRTO43612 131 aa2.57□□□□□ -2
NUP54-215ENST00000514313 ZNF93P35789 620 aaPredicted RBP2.57□□□□□ -2
NUP54-215ENST00000514313 LY96Q9Y6Y9 160 aa2.57□□□□□ -2
NUP54-215ENST00000514313 INTS1Q8N201 2190 aaKnown RBP2.56□□□□□ -2
NUP54-215ENST00000514313 HYPMO75409 117 aa2.56□□□□□ -2
NUP54-215ENST00000514313 OR4K15Q8NH41 348 aa2.56□□□□□ -2
NUP54-215ENST00000514313 ZNF714Q96N38 554 aa2.56□□□□□ -2
NUP54-215ENST00000514313 RNF11Q9Y3C5 154 aa2.56□□□□□ -2
NUP54-215ENST00000514313 ASB4Q9Y574 426 aa2.56□□□□□ -2
NUP54-215ENST00000514313 IFNA21P01568 189 aa2.55□□□□□ -2
NUP54-215ENST00000514313 LAMB2P55268 1798 aa2.55□□□□□ -2
NUP54-215ENST00000514313 RTL8BQ17RB0 113 aa2.55□□□□□ -2
NUP54-215ENST00000514313 KRTAP21-3Q3LHN1 58 aa2.55□□□□□ -2
NUP54-215ENST00000514313 Q6ZSA8 131 aa2.55□□□□□ -2
NUP54-215ENST00000514313 TMEM254Q8TBM7 123 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms