RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 C9orf152Q5JTZ5 239 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 OR5T1Q8NG75 326 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 KLK9Q9UKQ9 250 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 DMRT1Q9Y5R6 373 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 TRAV41A0A0B4J266 112 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 A0A1W2PPQ1 181 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 PSMB11A5LHX3 300 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 K7EIM0 57 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 COX7A2P2O60397 106 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 HNF1AP20823 631 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 SCGB2A2Q13296 93 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 C19orf35Q6ZS72 473 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 S100A7AQ86SG5 101 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 HIST3H2BBQ8N257 126 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 NECAP1Q8NC96 275 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 STXBP6Q8NFX7 210 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 OR10G8Q8NGN5 311 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 VN1R17PQ8TDU5 208 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 TXN2Q99757 166 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 DERL1Q9BUN8 251 aa14.3□□□□□ -0.12
CCDC88C-203ENST00000389856 PCP4L1A6NKN8 68 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 CD5LO43866 347 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 IGHV3-48P01763 117 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 IGHG2P01859 326 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 IGF1P05019 195 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 TEX38Q6PEX7 206 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 Q6YL49 198 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 BCL6BQ8N143 479 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 FANCD2OSQ96PS1 177 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 ZNF580Q9UK33 172 aa14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 SOX21Q9Y651 276 aaPredicted RBP14.29□□□□□ -0.12
CCDC88C-203ENST00000389856 UNC79Q9P2D8 2635 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 TRBV20OR9-2A0A075B6H5 130 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 IGKV1D-37A0A075B6S9 117 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 GNG7O60262 68 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 OR7C2O60412 319 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 AMY1AP04745 511 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 ACTL10Q5JWF8 245 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 OCC1Q8TAD7 63 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 TMEM190Q8WZ59 177 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 ELOVL1Q9BW60 279 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 OR51M1Q9H341 326 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 PRDM13Q9H4Q3 707 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 ZNF355PQ9NSJ1 428 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 C21orf62Q9NYP8 219 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 FBXL7Q9UJT9 491 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 VPREB3Q9UKI3 123 aa14.28□□□□□ -0.12
CCDC88C-203ENST00000389856 IGHV3-21A0A0B4J1V1 117 aa14.27□□□□□ -0.12
CCDC88C-203ENST00000389856 H3BUA1 57 aa14.27□□□□□ -0.12
CCDC88C-203ENST00000389856 IGHV4-59P01825 116 aa14.27□□□□□ -0.12
CCDC88C-203ENST00000389856 OR10J4P0C629 311 aa14.27□□□□□ -0.12
CCDC88C-203ENST00000389856 RPL19P84098 196 aaKnown RBP14.27□□□□□ -0.12
CCDC88C-203ENST00000389856 TMEM183AQ8IXX5 376 aa14.27□□□□□ -0.12
CCDC88C-203ENST00000389856 TMEM37Q8WXS4 190 aa14.27□□□□□ -0.12
CCDC88C-203ENST00000389856 MRPL36Q9P0J6 103 aaKnown RBP14.27□□□□□ -0.12
CCDC88C-203ENST00000389856 HELTA6NFD8 242 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 IGLC1P0CG04 106 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 FCGR2BP31994 310 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 Q56UQ5 140 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 C10orf113Q5VZT2 155 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 CIARTQ8N365 385 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 ZNF503Q96F45 646 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 NIT2Q9NQR4 276 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 IFITM10A6NMD0 228 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 OR2J3O76001 311 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 BRI3O95415 125 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 S100A7P31151 101 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 GNG4P50150 75 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 ZNF90Q03938 601 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 FAM167A-AS1Q96KT0 104 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 ATP6V0BQ99437 205 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 ABCA1O95477 2261 aa14.26□□□□□ -0.13
CCDC88C-203ENST00000389856 FAM223BA6NKX1 122 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 HYPMO75409 117 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 RD3LP0DJH9 198 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 GATA2P23769 480 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 TAS2R60P59551 318 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 PLP1P60201 277 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 YPEL3P61236 119 aaPredicted RBP14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 RHOGP84095 191 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 FAM223AQ8IWN6 122 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 TMEM86BQ8N661 226 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 IL36BQ9NZH7 164 aa14.25□□□□□ -0.13
CCDC88C-203ENST00000389856 TRBV9A0A0B4J1U6 114 aa14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 SH2D7A6NKC9 451 aaPredicted RBP14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 NDUFB8O95169 186 aa14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 UBE2L3P68036 154 aaKnown RBP14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 TIGITQ495A1 244 aa14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 EEF1AKMT3Q96AZ1 226 aa14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 SLC25A2Q9BXI2 301 aa14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 NPFFR1Q9GZQ6 430 aa14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 RNF24Q9Y225 148 aa14.24□□□□□ -0.13
CCDC88C-203ENST00000389856 ZNF320A2RRD8 509 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 G3V318 75 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 TOMM40O96008 361 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 RPL15P61313 204 aaKnown RBP14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 COX19Q49B96 90 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 GPR61Q9BZJ8 451 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 OSTCQ9NRP0 149 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 ITPR3Q14573 2671 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms