RNA–Protein interactions for RNA: ENST00000318988.10

CTDNEP1-201, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDNEP1, Length 1,549 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-201ENST00000318988 RCC1LQ96I51 464 aaKnown RBP21.07■□□□□ 0.96
CTDNEP1-201ENST00000318988 ZFAND3Q9H8U3 227 aa21.07■□□□□ 0.96
CTDNEP1-201ENST00000318988 SETD2Q9BYW2 2564 aaPredicted RBP21.07■□□□□ 0.96
CTDNEP1-201ENST00000318988 USF2Q15853 346 aaPredicted RBP21.06■□□□□ 0.96
CTDNEP1-201ENST00000318988 PATE2Q6UY27 113 aa21.06■□□□□ 0.96
CTDNEP1-201ENST00000318988 SAT2Q96F10 170 aaPredicted RBP21.06■□□□□ 0.96
CTDNEP1-201ENST00000318988 MRPL32Q9BYC8 188 aaKnown RBP21.06■□□□□ 0.96
CTDNEP1-201ENST00000318988 SLC25A22Q9H936 323 aa21.06■□□□□ 0.96
CTDNEP1-201ENST00000318988 PFDN2Q9UHV9 154 aa21.06■□□□□ 0.96
CTDNEP1-201ENST00000318988 HOXD3P31249 432 aaPredicted RBP21.05■□□□□ 0.96
CTDNEP1-201ENST00000318988 LINC00305Q7Z4B0 112 aa21.05■□□□□ 0.96
CTDNEP1-201ENST00000318988 METTL26Q96S19 204 aa21.05■□□□□ 0.96
CTDNEP1-201ENST00000318988 MRPL27Q9P0M9 148 aaKnown RBP21.05■□□□□ 0.96
CTDNEP1-201ENST00000318988 FUT9Q9Y231 359 aa21.05■□□□□ 0.96
CTDNEP1-201ENST00000318988 UHRF2Q96PU4 802 aa21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 SEPSECSQ9HD40 501 aaKnown RBP21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 CTXND1A0A1B0GTU2 59 aa21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 SEC14L6B5MCN3 397 aa21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 H2AFB1P0C5Y9 115 aa21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 TMEM190Q8WZ59 177 aa21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 RAB24Q969Q5 203 aa21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 ZNF414Q96IQ9 312 aa21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 DUX3Q96PT4 197 aa21.04■□□□□ 0.96
CTDNEP1-201ENST00000318988 CCL24O00175 119 aa21.03■□□□□ 0.96
CTDNEP1-201ENST00000318988 NPPCP23582 126 aa21.03■□□□□ 0.96
CTDNEP1-201ENST00000318988 TAS2R45P59539 299 aa21.03■□□□□ 0.96
CTDNEP1-201ENST00000318988 UNQ9165/PRO28630Q6UXU0 137 aa21.03■□□□□ 0.96
CTDNEP1-201ENST00000318988 NARS2Q96I59 477 aaKnown RBP21.03■□□□□ 0.96
CTDNEP1-201ENST00000318988 SLC25A39Q9BZJ4 359 aaPredicted RBP21.03■□□□□ 0.96
CTDNEP1-201ENST00000318988 RNF24Q9Y225 148 aa21.03■□□□□ 0.96
CTDNEP1-201ENST00000318988 UFC1Q9Y3C8 167 aa21.03■□□□□ 0.96
CTDNEP1-201ENST00000318988 TEX46H3BTG2 121 aa21.02■□□□□ 0.96
CTDNEP1-201ENST00000318988 C1QL4Q86Z23 238 aa21.02■□□□□ 0.96
CTDNEP1-201ENST00000318988 SFT2D1Q8WV19 159 aa21.02■□□□□ 0.96
CTDNEP1-201ENST00000318988 RAX2Q96IS3 184 aa21.02■□□□□ 0.96
CTDNEP1-201ENST00000318988 ZNF207O43670 478 aaKnown RBP21.01■□□□□ 0.95
CTDNEP1-201ENST00000318988 SLURP1P55000 103 aa21.01■□□□□ 0.95
CTDNEP1-201ENST00000318988 SYNJ2BPP57105 145 aa21.01■□□□□ 0.95
CTDNEP1-201ENST00000318988 SPATA31B1PQ5VZV4 182 aa21.01■□□□□ 0.95
CTDNEP1-201ENST00000318988 LCN15Q6UWW0 184 aa21.01■□□□□ 0.95
CTDNEP1-201ENST00000318988 MIR17HGQ75NE6 70 aa21.01■□□□□ 0.95
CTDNEP1-201ENST00000318988 PCNPQ8WW12 178 aaKnown RBP21.01■□□□□ 0.95
CTDNEP1-201ENST00000318988 TECRQ9NZ01 308 aaKnown RBP21.01■□□□□ 0.95
CTDNEP1-201ENST00000318988 MAP1LC3B2A6NCE7 125 aa21■□□□□ 0.95
CTDNEP1-201ENST00000318988 ZNF726P1Q15940 193 aa21■□□□□ 0.95
CTDNEP1-201ENST00000318988 CITED1Q99966 193 aa21■□□□□ 0.95
CTDNEP1-201ENST00000318988 SHANK2-AS3Q9BTD1 123 aa21■□□□□ 0.95
CTDNEP1-201ENST00000318988 MAP1LC3BQ9GZQ8 125 aa21■□□□□ 0.95
CTDNEP1-201ENST00000318988 DAZ1Q9NQZ3 744 aaKnown RBP21■□□□□ 0.95
CTDNEP1-201ENST00000318988 LGALS9O00182 355 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 HMGB3O15347 200 aaKnown RBP20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 C8orf88P0DMB2 117 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 KLF5Q13887 457 aaPredicted RBP20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 REC114Q7Z4M0 266 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 ADARB2-AS1A8MUL3 147 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 H3BRN7 92 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 HBE1P02100 147 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 NMBP08949 121 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 KHDC3LQ587J8 217 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 MBD3L1Q8WWY6 194 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 SCRT1Q9BWW7 348 aa20.99■□□□□ 0.95
CTDNEP1-201ENST00000318988 K7EMT4 169 aa20.98■□□□□ 0.95
CTDNEP1-201ENST00000318988 EIF3GO75821 320 aaKnown RBP eCLIP20.98■□□□□ 0.952e-6■■□□□ 12.1
CTDNEP1-201ENST00000318988 CRYBB3P26998 211 aa20.98■□□□□ 0.95
CTDNEP1-201ENST00000318988 CLLU1Q5K131 121 aa20.98■□□□□ 0.95
CTDNEP1-201ENST00000318988 C12orf54Q6X4T0 127 aa20.98■□□□□ 0.95
CTDNEP1-201ENST00000318988 SSX7Q7RTT5 188 aa20.98■□□□□ 0.95
CTDNEP1-201ENST00000318988 ZNF98A6NK75 572 aa20.97■□□□□ 0.95
CTDNEP1-201ENST00000318988 MYCNOSP40205 109 aa20.97■□□□□ 0.95
CTDNEP1-201ENST00000318988 FHL3Q13643 280 aa20.97■□□□□ 0.95
CTDNEP1-201ENST00000318988 C3orf56Q8N813 242 aa20.97■□□□□ 0.95
CTDNEP1-201ENST00000318988 HRH4Q9H3N8 390 aa20.97■□□□□ 0.95
CTDNEP1-201ENST00000318988 TRAV5A0A0B4J249 113 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 A0A1B0GV50 99 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 OR7C2O60412 319 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 CXorf1O96002 111 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 STAG3L2P0CL84 134 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 STAG3L3P0CL85 134 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 TM4SF20Q53R12 229 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 MORN5Q5VZ52 161 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 LEMD1Q68G75 181 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 LURAP1LQ8IV03 231 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 IQCF2Q8IXL9 164 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 PEMTQ9UBM1 199 aa20.96■□□□□ 0.95
CTDNEP1-201ENST00000318988 A0A1W2PS18 150 aa20.95■□□□□ 0.94
CTDNEP1-201ENST00000318988 FGF8P55075 233 aaPredicted RBP20.95■□□□□ 0.94
CTDNEP1-201ENST00000318988 PQLC2Q6ZP29 291 aa20.95■□□□□ 0.94
CTDNEP1-201ENST00000318988 STXBP6Q8NFX7 210 aa20.95■□□□□ 0.94
CTDNEP1-201ENST00000318988 GRAMD2BQ96HH9 432 aa20.95■□□□□ 0.94
CTDNEP1-201ENST00000318988 IGHV3-49A0A0A0MS15 119 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 BMI1P35226 326 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 DLX4Q92988 240 aaPredicted RBP20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 ZNF747Q9BV97 191 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 SLC25A2Q9BXI2 301 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 ATRQ13535 2644 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 TRAV1-1A0A0B4J248 108 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 A8MWP6 167 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 PF4P02776 101 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 ARL14EPLP0DKL9 152 aa20.94■□□□□ 0.94
CTDNEP1-201ENST00000318988 OR8I2Q8N0Y5 310 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 181 ms