RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 C9orf170A2RU37 121 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 WRBO00258 174 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 DEFB4AO15263 64 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 GIG44P09565 113 aaPredicted RBP12.96□□□□□ -0.33
PNKP-230ENST00000638016 INPP1P49441 399 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 OR2F1Q13607 317 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 DEDD2Q8WXF8 326 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 GRAMD2BQ96HH9 432 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 PBDC1Q9BVG4 233 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 TMED3Q9Y3Q3 217 aa12.96□□□□□ -0.33
PNKP-230ENST00000638016 IGKV1OR2-108A0A075B7D4 117 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 ZFP92A6NM28 416 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 H3BP45 60 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 BUB3O43684 328 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 SLC25A6P12236 298 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 ANXA7P20073 488 aaKnown RBP12.95□□□□□ -0.34
PNKP-230ENST00000638016 C4BPBP20851 252 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 TRPT1Q86TN4 253 aaKnown RBP12.95□□□□□ -0.34
PNKP-230ENST00000638016 STHQ8IWL8 128 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 OR11H2Q8NH07 326 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 RNF125Q96EQ8 232 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 SLC35E1Q96K37 410 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 RARRES2Q99969 163 aa12.95□□□□□ -0.34
PNKP-230ENST00000638016 PRSS46E5RG02 174 aa12.94□□□□□ -0.34
PNKP-230ENST00000638016 IL7P13232 177 aa12.94□□□□□ -0.34
PNKP-230ENST00000638016 DEFB1P60022 68 aa12.94□□□□□ -0.34
PNKP-230ENST00000638016 LYZP61626 148 aa12.94□□□□□ -0.34
PNKP-230ENST00000638016 PSMG4Q5JS54 123 aa12.94□□□□□ -0.34
PNKP-230ENST00000638016 ACTL10Q5JWF8 245 aa12.94□□□□□ -0.34
PNKP-230ENST00000638016 HELTA6NFD8 242 aa12.93□□□□□ -0.34
PNKP-230ENST00000638016 FAM90A26D6RGX4 464 aa12.93□□□□□ -0.34
PNKP-230ENST00000638016 SYNGR2O43760 224 aa12.93□□□□□ -0.34
PNKP-230ENST00000638016 JTBO76095 146 aa12.93□□□□□ -0.34
PNKP-230ENST00000638016 GPX4P36969 197 aaPredicted RBP12.93□□□□□ -0.34
PNKP-230ENST00000638016 UBE2MP61081 183 aaKnown RBP12.93□□□□□ -0.34
PNKP-230ENST00000638016 NAP1L6A6NFF2 107 aa12.92□□□□□ -0.34
PNKP-230ENST00000638016 OR4E1P0C645 316 aa12.92□□□□□ -0.34
PNKP-230ENST00000638016 EIF2B2P49770 351 aaKnown RBP12.92□□□□□ -0.34
PNKP-230ENST00000638016 POLR2GP62487 172 aaKnown RBP eCLIP12.92□□□□□ -0.34
PNKP-230ENST00000638016 SPANXN5Q5MJ07 72 aa12.92□□□□□ -0.34
PNKP-230ENST00000638016 SIGLEC15Q6ZMC9 328 aa12.92□□□□□ -0.34
PNKP-230ENST00000638016 GATAD1Q8WUU5 269 aa12.92□□□□□ -0.34
PNKP-230ENST00000638016 CLEC5AQ9NY25 188 aa12.92□□□□□ -0.34
PNKP-230ENST00000638016 PLA2G10O15496 165 aa12.91□□□□□ -0.34
PNKP-230ENST00000638016 MED6O75586 246 aa12.91□□□□□ -0.34
PNKP-230ENST00000638016 CCNKO75909 580 aa12.91□□□□□ -0.34
PNKP-230ENST00000638016 GATA2P23769 480 aaPredicted RBP12.91□□□□□ -0.34
PNKP-230ENST00000638016 RAB11AP62491 216 aa12.91□□□□□ -0.34
PNKP-230ENST00000638016 TMEM182Q6ZP80 229 aaPredicted RBP12.91□□□□□ -0.34
PNKP-230ENST00000638016 RAB40CQ96S21 281 aa12.91□□□□□ -0.34
PNKP-230ENST00000638016 WDR12Q9GZL7 423 aaKnown RBP12.91□□□□□ -0.34
PNKP-230ENST00000638016 NRN1Q9NPD7 142 aa12.91□□□□□ -0.34
PNKP-230ENST00000638016 PIGBOS1A0A0B4J2F0 54 aa12.9□□□□□ -0.34
PNKP-230ENST00000638016 ATP5IP56385 69 aaPredicted RBP12.9□□□□□ -0.34
PNKP-230ENST00000638016 NANOS2P60321 138 aaKnown RBP12.9□□□□□ -0.34
PNKP-230ENST00000638016 ACOT7LQ6ZUV0 252 aa12.9□□□□□ -0.34
PNKP-230ENST00000638016 THAP8Q8NA92 274 aa12.9□□□□□ -0.34
PNKP-230ENST00000638016 OR4D5Q8NGN0 318 aa12.9□□□□□ -0.34
PNKP-230ENST00000638016 TRGV9Q99603 122 aa12.9□□□□□ -0.34
PNKP-230ENST00000638016 ID3Q02535 119 aa12.89□□□□□ -0.35
PNKP-230ENST00000638016 C4orf46Q504U0 113 aa12.89□□□□□ -0.35
PNKP-230ENST00000638016 GDF5OSQ5U4N7 250 aa12.89□□□□□ -0.35
PNKP-230ENST00000638016 CEMP1Q6PRD7 247 aaPredicted RBP12.89□□□□□ -0.35
PNKP-230ENST00000638016 CIB3Q96Q77 187 aaPredicted RBP12.89□□□□□ -0.35
PNKP-230ENST00000638016 NUPR2A6NF83 97 aa12.88□□□□□ -0.35
PNKP-230ENST00000638016 SSSCA1O60232 199 aa12.88□□□□□ -0.35
PNKP-230ENST00000638016 AP2S1P53680 142 aaPredicted RBP12.88□□□□□ -0.35
PNKP-230ENST00000638016 OR8G2PQ6IF36 304 aa12.88□□□□□ -0.35
PNKP-230ENST00000638016 Q8NAQ8 132 aa12.88□□□□□ -0.35
PNKP-230ENST00000638016 COQ8AQ8NI60 647 aa12.88□□□□□ -0.35
PNKP-230ENST00000638016 PHLDA1Q8WV24 401 aaPredicted RBP12.88□□□□□ -0.35
PNKP-230ENST00000638016 LINC00476Q8WZB0 136 aa12.88□□□□□ -0.35
PNKP-230ENST00000638016 FBXL17Q9UF56 701 aa12.88□□□□□ -0.35
PNKP-230ENST00000638016 SNRPGP15A8MWD9 76 aa12.87□□□□□ -0.35
PNKP-230ENST00000638016 CCSO14618 274 aa12.87□□□□□ -0.35
PNKP-230ENST00000638016 SCGB1D2O95969 90 aa12.87□□□□□ -0.35
PNKP-230ENST00000638016 RBMY1A1P0DJD3 496 aaKnown RBP12.87□□□□□ -0.35
PNKP-230ENST00000638016 RBMY1CP0DJD4 496 aa12.87□□□□□ -0.35
PNKP-230ENST00000638016 ATF4P18848 351 aaPredicted RBP12.87□□□□□ -0.35
PNKP-230ENST00000638016 RBMY1FQ15415 496 aaKnown RBP12.87□□□□□ -0.35
PNKP-230ENST00000638016 TMEM217Q8N7C4 229 aa12.87□□□□□ -0.35
PNKP-230ENST00000638016 C20orf85Q9H1P6 137 aa12.87□□□□□ -0.35
PNKP-230ENST00000638016 C11orf68Q9H3H3 251 aaKnown RBP12.87□□□□□ -0.35
PNKP-230ENST00000638016 PSENENQ9NZ42 101 aa12.87□□□□□ -0.35
PNKP-230ENST00000638016 STRAPQ9Y3F4 350 aaKnown RBP12.87□□□□□ -0.35
PNKP-230ENST00000638016 BIRC6Q9NR09 4857 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 IGHV4-28A0A0C4DH34 117 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 PMS2P5A8MQ11 134 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 CENPXA8MT69 81 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 SOCS3O14543 225 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 SPP1P10451 314 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 NKX2-1P43699 371 aaPredicted RBP12.86□□□□□ -0.35
PNKP-230ENST00000638016 PAX9P55771 341 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 SNRPD3P62318 126 aaKnown RBP12.86□□□□□ -0.35
PNKP-230ENST00000638016 AKR1C1Q04828 323 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 MORN3Q6PF18 240 aaPredicted RBP12.86□□□□□ -0.35
PNKP-230ENST00000638016 CSNK1G2-AS1Q8NCQ2 148 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 C11orf45Q8TAV5 145 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 PPP1R14BQ96C90 147 aa12.86□□□□□ -0.35
PNKP-230ENST00000638016 C7orf50Q9BRJ6 194 aaKnown RBP12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 181.9 ms