RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ENY2Q9NPA8 101 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 ZNF355PQ9NSJ1 428 aa6.68□□□□□ -1.34
TRIM28-214ENST00000600840 LYRM2Q9NU23 88 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 CARHSP1Q9Y2V2 147 aaKnown RBP6.68□□□□□ -1.34
TRIM28-214ENST00000600840 HUWE1Q7Z6Z7 4374 aaKnown RBP6.67□□□□□ -1.34
TRIM28-214ENST00000600840 IGKV1D-37A0A075B6S9 117 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 IGKV1OR2-108A0A075B7D4 117 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 IGHV3-21A0A0B4J1V1 117 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 TMEM218A2RU14 115 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 CORTO00230 105 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 DFFBO76075 338 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 IGHV3-11P01762 117 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 IGHV3-48P01763 117 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 CLEC3BP05452 202 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 ADMP35318 185 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 CAV2P51636 162 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 SLURP1P55000 103 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 GAMTQ14353 236 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 C10orf91Q5T1B1 145 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 ZFAND6Q6FIF0 208 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 ADAMTSL5Q6ZMM2 481 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 OR1S2Q8NGQ3 325 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 OR1N2Q8NGR9 330 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 OR4X1Q8NH49 305 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 LYPD6BQ8NI32 183 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 PCNPQ8WW12 178 aaKnown RBP6.67□□□□□ -1.34
TRIM28-214ENST00000600840 TMED6Q8WW62 240 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 DLX4Q92988 240 aaPredicted RBP6.67□□□□□ -1.34
TRIM28-214ENST00000600840 MISP3Q96FF7 219 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 TXN2Q99757 166 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 PBDC1Q9BVG4 233 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 THYN1Q9P016 225 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 FBXL17Q9UF56 701 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 S4R3C0 116 aa6.67□□□□□ -1.34
TRIM28-214ENST00000600840 SORL1Q92673 2214 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 IGHV4OR15-8A0A075B7B6 117 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 A0A087WW49 117 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 TRBV7-1A0A0A6YYK4 115 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 FNDC10F2Z333 226 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 BMPR1BO00238 502 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 IGKV1-17P01599 117 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 IGHV3-23P01764 117 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 APOC3P02656 99 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 METTL15P1P0C7V9 234 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 SPP1P10451 314 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 RAB2AP61019 212 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 RPP30P78346 268 aaKnown RBP6.66□□□□□ -1.34
TRIM28-214ENST00000600840 NHLH2Q02577 135 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 PEA15Q15121 130 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 VWC2Q2TAL6 325 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 FAM74A1Q5RGS3 127 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 RPL7L1Q6DKI1 246 aaKnown RBP6.66□□□□□ -1.34
TRIM28-214ENST00000600840 NARS2Q96I59 477 aaKnown RBP6.66□□□□□ -1.34
TRIM28-214ENST00000600840 CHRDL1Q9BU40 450 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 NKX6-2Q9C056 277 aaPredicted RBP6.66□□□□□ -1.34
TRIM28-214ENST00000600840 C21orf62Q9NYP8 219 aa6.66□□□□□ -1.34
TRIM28-214ENST00000600840 PEF1Q9UBV8 284 aaKnown RBP6.66□□□□□ -1.34
TRIM28-214ENST00000600840 CYB5BO43169 146 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 CLN5O75503 358 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 HSPB1P04792 205 aaKnown RBP6.65□□□□□ -1.34
TRIM28-214ENST00000600840 IFNA4P05014 189 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 IGLC1P0CG04 106 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 SULT1A1P50225 295 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 MFAP4P55083 255 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 RAB11AP62491 216 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 DLK1P80370 383 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 EWSR1Q01844 656 aaKnown RBP eCLIP6.65□□□□□ -1.34
TRIM28-214ENST00000600840 ZNF616Q08AN1 781 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 KLF5Q13887 457 aaPredicted RBP6.65□□□□□ -1.34
TRIM28-214ENST00000600840 PXDC1Q5TGL8 231 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 BTNL8Q6UX41 500 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 CLEC19AQ6UXS0 136 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 STX12Q86Y82 276 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 THAP8Q8NA92 274 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 BPIFCQ8NFQ6 507 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 NPIPB3Q92617 1050 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 EEF1AKMT3Q96AZ1 226 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 PINX1Q96BK5 328 aaKnown RBP6.65□□□□□ -1.34
TRIM28-214ENST00000600840 GGACTQ9BVM4 153 aa6.65□□□□□ -1.34
TRIM28-214ENST00000600840 PARD6GQ9BYG4 376 aaPredicted RBP6.65□□□□□ -1.34
TRIM28-214ENST00000600840 SACSQ9NZJ4 4579 aa6.65□□□□□ -1.35
TRIM28-214ENST00000600840 PPP5D1E7EU14 171 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 F8W036 122 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 OVOL1O14753 267 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 CST7O76096 145 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 HBE1P02100 147 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 OR8U8P0C7N1 319 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 OPRK1P41145 380 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 HBG1P69891 147 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 HBG2P69892 147 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 FAM209BQ5JX69 171 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 ETFRF1Q6IPR1 90 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 TMEM182Q6ZP80 229 aaPredicted RBP6.64□□□□□ -1.35
TRIM28-214ENST00000600840 SLC16A13Q7RTY0 426 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 TMEM144Q7Z5S9 345 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 GPHB5Q86YW7 130 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 OR10P1Q8NGE3 313 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 WFDC1Q9HC57 220 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 TREM1Q9NP99 234 aa6.64□□□□□ -1.35
TRIM28-214ENST00000600840 UQCC1Q9NVA1 299 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms