RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 A0A1W2PS18 150 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 ZNF253O75346 499 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 SSTP61278 116 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 PAX2Q02962 417 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 BLNKQ8WV28 456 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 SNHG12Q9BXW3 62 aa18.2■□□□□ 0.5
VPS53-211ENST00000571805 ZNF331Q9NQX6 463 aaPredicted RBP18.2■□□□□ 0.5
VPS53-211ENST00000571805 IGHV3-21A0A0B4J1V1 117 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 TEX22C9J3V5 150 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 APCSP02743 223 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 RASL11AQ6T310 242 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 VKORC1Q9BQB6 163 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 PGPA6NDG6 321 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 NBEAP1P0C6P0 100 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 SLAQ13239 276 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 NUP35Q8NFH5 326 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 C22orf15Q8WYQ4 148 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 KCNS1Q96KK3 526 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 CLEC7AQ9BXN2 247 aa18.19■□□□□ 0.5
VPS53-211ENST00000571805 HYPMO75409 117 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 SLC25A5P05141 298 aaKnown RBP18.18■□□□□ 0.5
VPS53-211ENST00000571805 PPP1R27Q86WC6 154 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 VN1R17PQ8TDU5 208 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 C20orf144Q9BQM9 153 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 FAM103A1Q9BTL3 118 aaKnown RBP18.18■□□□□ 0.5
VPS53-211ENST00000571805 TBL2Q9Y4P3 447 aaKnown RBP18.18■□□□□ 0.5
VPS53-211ENST00000571805 F11RQ9Y624 299 aaKnown RBP18.18■□□□□ 0.5
VPS53-211ENST00000571805 SPTBN2O15020 2390 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 GP9P14770 177 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 PLP1P60201 277 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 GDF5OSQ5U4N7 250 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 DCHS1Q96JQ0 3298 aa18.18■□□□□ 0.5
VPS53-211ENST00000571805 CORTO00230 105 aa18.17■□□□□ 0.5
VPS53-211ENST00000571805 RBPJQ06330 500 aa18.17■□□□□ 0.5
VPS53-211ENST00000571805 Q8N976 141 aa18.17■□□□□ 0.5
VPS53-211ENST00000571805 UBE2G1P62253 170 aa18.17■□□□□ 0.5
VPS53-211ENST00000571805 PRR27Q6MZM9 219 aa18.17■□□□□ 0.5
VPS53-211ENST00000571805 GSX1Q9H4S2 264 aaPredicted RBP18.17■□□□□ 0.5
VPS53-211ENST00000571805 NRN1Q9NPD7 142 aa18.17■□□□□ 0.5
VPS53-211ENST00000571805 FAM87AP0C7U9 286 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 C8orf46Q8TAG6 207 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 TSKUQ8WUA8 353 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 SGK494Q96LW2 274 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 MLST8Q9BVC4 326 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 MUC6Q6W4X9 2439 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 LINC01560Q8TB33 94 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 SMIM12Q96EX1 92 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 CHRDL1Q9BU40 450 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 ZNF586Q9NXT0 402 aa18.16■□□□□ 0.5
VPS53-211ENST00000571805 K7ENP7 123 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 HIST1H1EP10412 219 aaKnown RBP18.15■□□□□ 0.5
VPS53-211ENST00000571805 RAB4AP20338 218 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 AMTP48728 403 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 TMEM68Q96MH6 324 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 GPR82Q96P67 336 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 FBXL15Q9H469 300 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 PPIAL4CA0A0B4J2A2 164 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 VWC2LB2RUY7 222 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 RBP4P02753 201 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 PPIAL4GP0DN37 164 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 LEMD1Q68G75 181 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 NEU1Q99519 415 aa18.15■□□□□ 0.5
VPS53-211ENST00000571805 ZZEF1O43149 2961 aa18.14■□□□□ 0.49
VPS53-211ENST00000571805 LY6LH3BQJ8 138 aa18.14■□□□□ 0.49
VPS53-211ENST00000571805 M0R143 59 aa18.14■□□□□ 0.49
VPS53-211ENST00000571805 ZNF324O75467 553 aaPredicted RBP18.14■□□□□ 0.49
VPS53-211ENST00000571805 COX7A1P24310 79 aa18.14■□□□□ 0.49
VPS53-211ENST00000571805 NUTF2P61970 127 aaKnown RBP18.14■□□□□ 0.49
VPS53-211ENST00000571805 MUC15Q8N387 334 aa18.14■□□□□ 0.49
VPS53-211ENST00000571805 C18orf32Q8TCD1 76 aa18.14■□□□□ 0.49
VPS53-211ENST00000571805 ATG101Q9BSB4 218 aa18.14■□□□□ 0.49
VPS53-211ENST00000571805 KRTDAPP60985 99 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 TLN1Q9Y490 2541 aaKnown RBP18.13■□□□□ 0.49
VPS53-211ENST00000571805 HIGD1CA8MV81 97 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 SIAH2O43255 324 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 PMCHP20382 165 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 NIT1Q86X76 327 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 C5orf17Q8NAS9 161 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 RPEQ96AT9 228 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 MIEN1Q9BRT3 115 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 VAMP8Q9BV40 100 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 PAM16Q9Y3D7 125 aa18.13■□□□□ 0.49
VPS53-211ENST00000571805 TOMM40O96008 361 aa18.12■□□□□ 0.49
VPS53-211ENST00000571805 IGLC1P0CG04 106 aa18.12■□□□□ 0.49
VPS53-211ENST00000571805 LINC00322Q6ZN03 302 aaPredicted RBP18.12■□□□□ 0.49
VPS53-211ENST00000571805 SRSF12Q8WXF0 261 aaKnown RBP18.12■□□□□ 0.49
VPS53-211ENST00000571805 RPH3ALQ9UNE2 315 aa18.12■□□□□ 0.49
VPS53-211ENST00000571805 H3BTX0 84 aa18.12■□□□□ 0.49
VPS53-211ENST00000571805 I3L2K1 104 aa18.12■□□□□ 0.49
VPS53-211ENST00000571805 PSG1P11464 419 aa18.12■□□□□ 0.49
VPS53-211ENST00000571805 FOXC1Q12948 553 aa18.12■□□□□ 0.49
VPS53-211ENST00000571805 Q9H3A6 140 aa18.12■□□□□ 0.49
VPS53-211ENST00000571805 MRPL27Q9P0M9 148 aaKnown RBP18.12■□□□□ 0.49
VPS53-211ENST00000571805 DIRC3C9JPN6 131 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 LTAP01374 205 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 FMC1Q96HJ9 113 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 PRSS22Q9GZN4 317 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 HIGD1AQ9Y241 93 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 TACC2O95359 2948 aa18.11■□□□□ 0.49
VPS53-211ENST00000571805 TCRAP04437 139 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms