RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 PRNDQ9UKY0 176 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 PYCARDQ9ULZ3 195 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 BAIAP2Q9UQB8 552 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 AMMECR1Q9Y4X0 333 aaPredicted RBP1.52□□□□□ -2.17
SCFD1-221ENST00000556534 CENPFP49454 3210 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 DOCK4Q8N1I0 1966 aa1.52□□□□□ -2.17
SCFD1-221ENST00000556534 FCGBPQ9Y6R7 5405 aaPredicted RBP1.52□□□□□ -2.17
SCFD1-221ENST00000556534 UNC13BO14795 1591 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 DIP2AQ14689 1571 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 DISP1Q96F81 1524 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 FHAD1B1AJZ9 1412 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 MICAL3Q7RTP6 2002 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 FLNBO75369 2602 aaKnown RBP1.51□□□□□ -2.17
SCFD1-221ENST00000556534 ZNF860A6NHJ4 632 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 IBA57-AS1B1ANH7 110 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 ZNF737O75373 536 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 PRB1P04280 392 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 CASP1P29466 404 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 NCALDP61601 193 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 RELAQ04206 551 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 TMEM155Q4W5P6 130 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 HIST3H2BBQ8N257 126 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 EXOC3-AS1Q8N2X6 119 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 ZNF439Q8NDP4 499 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 TMEM106AQ96A25 262 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 DOHHQ9BU89 302 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 TMEM133Q9H2Q1 129 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 TMEM106BQ9NUM4 274 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 SBF1O95248 1867 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 C3P01024 1663 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 CUL7Q14999 1698 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 SYNMO15061 1565 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 KDM5CP41229 1560 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 CFAP47Q6ZTR5 3102 aa1.51□□□□□ -2.17
SCFD1-221ENST00000556534 KDM5DQ9BY66 1539 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 ZCCHC6Q5VYS8 1495 aaKnown RBP1.5□□□□□ -2.17
SCFD1-221ENST00000556534 LRRC9Q6ZRR7 1453 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 FMN1Q68DA7 1419 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 PHLPP1O60346 1717 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 ARHGEF28Q8N1W1 1705 aaKnown RBP1.5□□□□□ -2.17
SCFD1-221ENST00000556534 C1orf196B1AJZ1 125 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 J3QRK9 145 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 MFSD11O43934 449 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 RPSAP08865 295 aaKnown RBP1.5□□□□□ -2.17
SCFD1-221ENST00000556534 OR4E1P0C645 316 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 CRYGAP11844 174 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 S100A4P26447 101 aaKnown RBP1.5□□□□□ -2.17
SCFD1-221ENST00000556534 RHOBP62745 196 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 GNG5P63218 68 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 NNATQ16517 81 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 LCN15Q6UWW0 184 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 Q6ZQT0 140 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 TMEM86AQ8N2M4 240 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 UFC1Q9Y3C8 167 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 SHPRHQ149N8 1683 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 LAMA3Q16787 3333 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 TTC28Q96AY4 2481 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 BIVM-ERCC5R4GMW8 1640 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 FN1P02751 2386 aaKnown RBP1.5□□□□□ -2.17
SCFD1-221ENST00000556534 PCDH15Q96QU1 1955 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 ZMYM4Q5VZL5 1548 aa1.5□□□□□ -2.17
SCFD1-221ENST00000556534 USP9XQ93008 2570 aaPredicted RBP1.5□□□□□ -2.17
SCFD1-221ENST00000556534 ZNF292O60281 2723 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 KMT2BQ9UMN6 2715 aaPredicted RBP1.49□□□□□ -2.17
SCFD1-221ENST00000556534 EML6Q6ZMW3 1958 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 EPG5Q9HCE0 2579 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 IGKV1D-42A0A075B6H8 117 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 C19orf84I3L1E1 186 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 CTSDP07339 412 aaPredicted RBP1.49□□□□□ -2.17
SCFD1-221ENST00000556534 SPI1P17947 270 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 ZNF345Q14585 488 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 Q6ZRN7 208 aaPredicted RBP1.49□□□□□ -2.17
SCFD1-221ENST00000556534 DHFR2Q86XF0 187 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 OR8B3Q8NGG8 313 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 OR13C6PQ8NH95 151 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 GINS4Q9BRT9 223 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 BOLA2Q9H3K6 86 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 TRABDQ9H4I3 376 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 OSTCQ9NRP0 149 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 CKLFQ9UBR5 152 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 LHFPL6Q9Y693 200 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 EFCAB5A4FU69 1503 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 ZFYVE16Q7Z3T8 1539 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 DLC1Q96QB1 1528 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 ASH1LQ9NR48 2969 aaKnown RBP1.49□□□□□ -2.17
SCFD1-221ENST00000556534 ATP10BO94823 1461 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 CNTLNQ9NXG0 1405 aa1.49□□□□□ -2.17
SCFD1-221ENST00000556534 SCN8AQ9UQD0 1980 aa1.48□□□□□ -2.17
SCFD1-221ENST00000556534 COL4A5P29400 1685 aa1.48□□□□□ -2.17
SCFD1-221ENST00000556534 ZNF142P52746 1687 aaPredicted RBP1.48□□□□□ -2.17
SCFD1-221ENST00000556534 ROCK1Q13464 1354 aa1.48□□□□□ -2.17
SCFD1-221ENST00000556534 ZCCHC11Q5TAX3 1644 aaKnown RBP1.48□□□□□ -2.17
SCFD1-221ENST00000556534 ABCA8O94911 1581 aa1.48□□□□□ -2.17
SCFD1-221ENST00000556534 ADAMTS12P58397 1594 aa1.48□□□□□ -2.17
SCFD1-221ENST00000556534 CEP170BQ9Y4F5 1589 aaPredicted RBP1.48□□□□□ -2.17
SCFD1-221ENST00000556534 CACNA1BQ00975 2339 aa1.48□□□□□ -2.17
SCFD1-221ENST00000556534 A0A087X0T9 212 aa1.48□□□□□ -2.17
SCFD1-221ENST00000556534 G3V2T6 193 aa1.48□□□□□ -2.17
SCFD1-221ENST00000556534 PGRMC1O00264 195 aaKnown RBP1.48□□□□□ -2.17
SCFD1-221ENST00000556534 CYB5BO43169 146 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms