RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 SPATA45Q537H7 98 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 IGHV1-3A0A0C4DH29 117 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 ZNF25P17030 456 aaPredicted RBP13.29□□□□□ -0.28
CUX1-213ENST00000549414 C2orf83Q53S99 150 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 DGAT2L7PQ6IED9 249 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 MUC22E2RYF6 1773 aaPredicted RBP13.29□□□□□ -0.28
CUX1-213ENST00000549414 IGLV1-44P01699 117 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 HBBP68871 147 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 ZNF841Q6ZN19 808 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 FAM169BQ8N8A8 192 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 GPR82Q96P67 336 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 SELENOKQ9Y6D0 94 aa13.29□□□□□ -0.28
CUX1-213ENST00000549414 DYSFO75923 2080 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 SERF1AO75920 110 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 CX3CL1P78423 397 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 OR10J6PQ8NGY7 276 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 DMRT1Q9Y5R6 373 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 CHD7Q9P2D1 2997 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 A0A1W2PRE2 83 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 SOD3P08294 240 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 CD99P14209 185 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 ADMP35318 185 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 RNF125Q96EQ8 232 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 GGCTO75223 188 aaKnown RBP13.28□□□□□ -0.28
CUX1-213ENST00000549414 DLX6P56179 175 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 SPRNQ5BIV9 151 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 IGFL3Q6UXB1 125 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 HAPLN4Q86UW8 402 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 EEF1AKMT3Q96AZ1 226 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 SPRY4Q9C004 299 aa13.28□□□□□ -0.28
CUX1-213ENST00000549414 TRAV40A0A0B4J280 105 aa13.27□□□□□ -0.28
CUX1-213ENST00000549414 BTF3P20290 206 aaKnown RBP13.27□□□□□ -0.28
CUX1-213ENST00000549414 TBL2Q9Y4P3 447 aaKnown RBP13.27□□□□□ -0.28
CUX1-213ENST00000549414 A0A1B0GW64 132 aa13.27□□□□□ -0.28
CUX1-213ENST00000549414 PSG9Q00887 426 aa13.27□□□□□ -0.28
CUX1-213ENST00000549414 TMEM167AQ8TBQ9 72 aa13.27□□□□□ -0.28
CUX1-213ENST00000549414 EPDR1Q9UM22 224 aa13.27□□□□□ -0.28
CUX1-213ENST00000549414 C5orf52A6NGY3 159 aa13.27□□□□□ -0.29
CUX1-213ENST00000549414 NBL1P41271 181 aa13.27□□□□□ -0.29
CUX1-213ENST00000549414 IFITM10A6NMD0 228 aa13.27□□□□□ -0.29
CUX1-213ENST00000549414 TAS2R60P59551 318 aa13.27□□□□□ -0.29
CUX1-213ENST00000549414 MAPK1IP1LQ8NDC0 245 aa13.27□□□□□ -0.29
CUX1-213ENST00000549414 OR4C5Q8NGB2 326 aa13.27□□□□□ -0.29
CUX1-213ENST00000549414 PSG1P11464 419 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 CEACAM8P31997 349 aaPredicted RBP13.26□□□□□ -0.29
CUX1-213ENST00000549414 HINT1P49773 126 aaPredicted RBP13.26□□□□□ -0.29
CUX1-213ENST00000549414 FAM106AQ4KMX7 169 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 C11orf53Q8IXP5 236 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 Q8NFD4 153 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 TMEM170AQ8WVE7 144 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 TRBV24-1A0A075B6N3 115 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 NMUP48645 174 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 C15orf65H3BRN8 121 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 ZNF726P1Q15940 193 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 C17orf58Q2M2W7 97 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 TMEM219Q86XT9 240 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 SCRT1Q9BWW7 348 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 ABCA12Q86UK0 2595 aa13.26□□□□□ -0.29
CUX1-213ENST00000549414 TRBV9A0A0B4J1U6 114 aa13.25□□□□□ -0.29
CUX1-213ENST00000549414 UBE2CO00762 179 aa13.25□□□□□ -0.29
CUX1-213ENST00000549414 SIAH2O43255 324 aa13.25□□□□□ -0.29
CUX1-213ENST00000549414 RNASE2P10153 161 aaKnown RBP13.25□□□□□ -0.29
CUX1-213ENST00000549414 EXOC3-AS1Q8N2X6 119 aa13.25□□□□□ -0.29
CUX1-213ENST00000549414 RPP21Q9H633 154 aaKnown RBP13.25□□□□□ -0.29
CUX1-213ENST00000549414 LINC00479Q96M42 142 aa13.25□□□□□ -0.29
CUX1-213ENST00000549414 KLK15Q9H2R5 256 aa13.25□□□□□ -0.29
CUX1-213ENST00000549414 DKK4Q9UBT3 224 aa13.25□□□□□ -0.29
CUX1-213ENST00000549414 PF4P02776 101 aa13.25□□□□□ -0.29
CUX1-213ENST00000549414 HIST1H1AQ02539 215 aaPredicted RBP13.25□□□□□ -0.29
CUX1-213ENST00000549414 PMS2P5A8MQ11 134 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 RHOGP84095 191 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 KCNS1Q96KK3 526 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 HIST1H2BLQ99880 126 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 LRRK2Q5S007 2527 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 A0A1W2PS18 150 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 EBLN2Q6P2I7 272 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 BRD3OSQ6XYD6 125 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 CNTFRP26992 372 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 DIAPH2-AS1Q14236 149 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 ATG101Q9BSB4 218 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 PRO3102Q9H379 93 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 SIGLEC9Q9Y336 463 aa13.24□□□□□ -0.29
CUX1-213ENST00000549414 LAMA3Q16787 3333 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 TRAV8-1A0A0A6YYK1 113 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 GPX1P07203 203 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 GZMBP10144 247 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 ID1P41134 155 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 TNFRSF14Q92956 283 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 A0A1B0GUT8 65 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 BUB1B-PAK6H3BSN5 160 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 C19orf35Q6ZS72 473 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 VPS25Q9BRG1 176 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 A0A1W2PPI3 338 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 ZNF600Q6ZNG1 722 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 TMEM136Q6ZRR5 245 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 PHLDA3Q9Y5J5 127 aa13.23□□□□□ -0.29
CUX1-213ENST00000549414 FOLR2P14207 255 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 VMO1Q7Z5L0 202 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 EPG5Q9HCE0 2579 aa13.22□□□□□ -0.29
CUX1-213ENST00000549414 AP5S1Q9NUS5 200 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms