RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PLP1P60201 277 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 BHLHA15Q7RTS1 189 aaPredicted RBP10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 TEX45Q8NA69 505 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 CRXO43186 299 aaPredicted RBP10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 MOSP00540 346 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 LOXL3P58215 753 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 RBPMS2Q6ZRY4 209 aaKnown RBP10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 OR10AG1Q8NH19 301 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 RAB9BQ9NP90 201 aa10.43□□□□□ -0.74
SFSWAP-209ENST00000540469 PATE3B3GLJ2 98 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 KLRC4-KLRK1H3BQV0 150 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 DLL1O00548 723 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 SSBP2P81877 361 aaPredicted RBP10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 FAM201AQ5SY85 155 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 OR2K2Q8NGT1 345 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 FLYWCH2Q96CP2 140 aaKnown RBP10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 MED13Q9UHV7 2174 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 TRGV5A0A0B4J1U4 118 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 RNASE2P10153 161 aaKnown RBP10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 COX8AP10176 69 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 MZT1Q08AG7 82 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 FOXE3Q13461 319 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 C2orf83Q53S99 150 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 INO80CQ6PI98 192 aaPredicted RBP10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 MOGAT3Q86VF5 341 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 DDB2Q92466 427 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 HARBI1Q96MB7 349 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 NAV3Q8IVL0 2385 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 MUC6Q6W4X9 2439 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 A0A1B0GXF2 115 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 SAA1P0DJI8 122 aaPredicted RBP10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 REG1BP48304 166 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 SH3BGRL2Q9UJC5 107 aa10.42□□□□□ -0.74
SFSWAP-209ENST00000540469 LOC389332A0A1B0GUA5 103 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 GUSBP1Q15486 140 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 FAM90A1Q86YD7 464 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 THYN1Q9P016 225 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 INTS1Q8N201 2190 aaKnown RBP10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 TPRP12270 2363 aaKnown RBP10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 A0A0G2JLM5 398 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 TM4SF20Q53R12 229 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 C5orf17Q8NAS9 161 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 ZNRD1Q9P1U0 126 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 GTSF1Q8WW33 167 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 C1RLQ9NZP8 487 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 ZNF257Q9Y2Q1 563 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 SPCS1Q9Y6A9 102 aa10.41□□□□□ -0.74
SFSWAP-209ENST00000540469 SERTM2A0A1B0GWG4 89 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 hADV38S2A0JD32 116 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 F2RL2O00254 374 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 SPRY3O43610 288 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 SP9P0CG40 484 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 NMUP48645 174 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 OR1L8Q8NGR8 309 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 TMEM186Q96B77 213 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 SOX21Q9Y651 276 aaPredicted RBP10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 SRRM4A7MD48 611 aaKnown RBP10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 NBEAP1P0C6P0 100 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 PRB4P10163 310 aaPredicted RBP10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 KIR3DS1Q14943 382 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 SAMD13Q5VXD3 122 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 LINC00322Q6ZN03 302 aaPredicted RBP10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 PRNTQ86SH4 94 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 PERPQ96FX8 193 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 JKAMPQ9P055 326 aa10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 F11RQ9Y624 299 aaKnown RBP10.4□□□□□ -0.74
SFSWAP-209ENST00000540469 ROS1P08922 2347 aa10.4□□□□□ -0.75
SFSWAP-209ENST00000540469 C9orf118A6NHY6 69 aa10.4□□□□□ -0.75
SFSWAP-209ENST00000540469 PLXNB1O43157 2135 aa10.4□□□□□ -0.75
SFSWAP-209ENST00000540469 CACNG8Q8WXS5 425 aa10.4□□□□□ -0.75
SFSWAP-209ENST00000540469 TNFRSF14Q92956 283 aa10.4□□□□□ -0.75
SFSWAP-209ENST00000540469 ZNF714Q96N38 554 aa10.4□□□□□ -0.75
SFSWAP-209ENST00000540469 RABAC1Q9UI14 185 aa10.4□□□□□ -0.75
SFSWAP-209ENST00000540469 IGHV3-21A0A0B4J1V1 117 aa10.39□□□□□ -0.75
SFSWAP-209ENST00000540469 A1L4Q6 167 aa10.39□□□□□ -0.75
SFSWAP-209ENST00000540469 SUB1P53999 127 aaKnown RBP eCLIP10.39□□□□□ -0.75
SFSWAP-209ENST00000540469 FXYD5Q96DB9 178 aa10.39□□□□□ -0.75
SFSWAP-209ENST00000540469 TRAV8-1A0A0A6YYK1 113 aa10.39□□□□□ -0.75
SFSWAP-209ENST00000540469 CECR9P0C854 216 aa10.39□□□□□ -0.75
SFSWAP-209ENST00000540469 KBTBD11-OT1A0A1B0GTJ5 212 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 C22orf46C9J442 243 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 NTN3O00634 580 aaPredicted RBP10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 APELAP0DMC3 54 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 C10orf55Q5SWW7 151 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 VWA1Q6PCB0 445 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 STXBP6Q8NFX7 210 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 TCRBV4S1A1TA0A5B7 111 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 SRRM5B3KS81 715 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 PATE2Q6UY27 113 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 C2orf91Q6ZV80 131 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 CIARTQ8N365 385 aaPredicted RBP10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 GCSAMQ8N6F7 178 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 SRSF12Q8WXF0 261 aaKnown RBP10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 PTPRBP23467 1997 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 G3V4G9 280 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 K7EP34 96 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 K7ESF4 209 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 FABP2P12104 132 aa10.38□□□□□ -0.75
SFSWAP-209ENST00000540469 ACP1P24666 158 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms