RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 KRTAP10-5P60370 271 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 RPL18Q07020 188 aaKnown RBP2.55□□□□□ -2
VPS13D-207ENST00000476169 DHRS2Q13268 280 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 KPRPQ5T749 579 aaPredicted RBP2.55□□□□□ -2
VPS13D-207ENST00000476169 DHFR2Q86XF0 187 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 BPIFA4PQ86YQ2 179 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 OR5C1Q8NGR4 320 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 NUP205Q92621 2012 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 FGF13Q92913 245 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 BORCS5Q969J3 196 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 UPK3BQ9BT76 320 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 DERL1Q9BUN8 251 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 GSKIPQ9P0R6 139 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 CKLFQ9UBR5 152 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 ZNF443Q9Y2A4 671 aaPredicted RBP2.55□□□□□ -2
VPS13D-207ENST00000476169 SCN10AQ9Y5Y9 1956 aa2.55□□□□□ -2
VPS13D-207ENST00000476169 DSCAML1Q8TD84 2053 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 NLRC5Q86WI3 1866 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 ATAD5Q96QE3 1844 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 ARL5CA6NH57 179 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 FABP5P3A8MUU1 101 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 TRAPPC2LH3BP13 241 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 TP53I11O14683 189 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 CYB5BO43169 146 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 PIAS1O75925 651 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 IGKV1-5P01602 117 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 CSN2P05814 226 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 RPS4Y1P22090 263 aaKnown RBP2.54□□□□□ -2
VPS13D-207ENST00000476169 CA5AP35218 305 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 CCR2P41597 374 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 FLI1Q01543 452 aaPredicted RBP2.54□□□□□ -2
VPS13D-207ENST00000476169 ZNF117Q03924 483 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 LTC4SQ16873 150 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 FAM229BQ4G0N7 80 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 TOMM20LQ6UXN7 152 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 TCF24Q7RTU0 167 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 KRTAP11-1Q8IUC1 163 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 CLVS1Q8IUQ0 354 aaPredicted RBP2.54□□□□□ -2
VPS13D-207ENST00000476169 OR10D4PQ8NGN7 298 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 OR5J2Q8NH18 312 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 C11orf40Q8WZ69 217 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 CYYR1Q96J86 154 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 TMEM138Q9NPI0 162 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 PCTPQ9UKL6 214 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 ZNF835Q9Y2P0 537 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 ASB4Q9Y574 426 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 DOCK3Q8IZD9 2030 aa2.54□□□□□ -2
VPS13D-207ENST00000476169 PRRC2AP48634 2157 aaKnown RBP2.53□□□□□ -2
VPS13D-207ENST00000476169 OTOFQ9HC10 1997 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 COLCA2A8K830 154 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 GGTLC3B5MD39 225 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 RPL36A-HNRNPH2H7BZ11 118 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 CREBL2O60519 120 aaPredicted RBP2.53□□□□□ -2
VPS13D-207ENST00000476169 NPYP01303 97 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 SRIP30626 198 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 EIF2B2P49770 351 aaKnown RBP2.53□□□□□ -2
VPS13D-207ENST00000476169 ZNF80P51504 273 aaPredicted RBP2.53□□□□□ -2
VPS13D-207ENST00000476169 KRTAP10-3P60369 221 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 HIST1H4AP62805 103 aaKnown RBP2.53□□□□□ -2
VPS13D-207ENST00000476169 C2orf91Q6ZV80 131 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 LCA10Q71F78 164 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 MSRB3Q8IXL7 192 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 OR10P1Q8NGE3 313 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 PLEKHB2Q96CS7 222 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 OR8B2Q96RD0 313 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 GINS4Q9BRT9 223 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 OR2J1Q9GZK6 312 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 DUSP21Q9H596 190 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 LRTM1Q9HBL6 345 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 XAGE1AQ9HD64 81 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 TXNL4BQ9NX01 149 aaKnown RBP2.53□□□□□ -2
VPS13D-207ENST00000476169 NAT8Q9UHE5 227 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 SBF1O95248 1867 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 SCN4AP35499 1836 aa2.53□□□□□ -2
VPS13D-207ENST00000476169 DICER1Q9UPY3 1922 aaKnown RBP2.52□□□□□ -2.01
VPS13D-207ENST00000476169 RALGAPA2Q2PPJ7 1873 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 TRAV38-1A0A0B4J264 116 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 A0A1W2PQD3 144 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 C17orf98A8MV24 154 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 ZNF73O43830 326 aaPredicted RBP2.52□□□□□ -2.01
VPS13D-207ENST00000476169 GZMBP10144 247 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 GZMHP20718 246 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 OGNP20774 298 aaKnown RBP2.52□□□□□ -2.01
VPS13D-207ENST00000476169 GTF2A1P52655 376 aaPredicted RBP2.52□□□□□ -2.01
VPS13D-207ENST00000476169 FOXA1P55317 472 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 ZNF141Q15928 474 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 MIAQ16674 131 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 KRTAP25-1Q3LHN0 102 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 CCDC153Q494R4 210 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 SPANXN3Q5MJ09 141 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 ZFAND6Q6FIF0 208 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 TMEM136Q6ZRR5 245 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 TRAPPC6BQ86SZ2 158 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 IFT20Q8IY31 132 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 OR9Q1Q8NGQ5 310 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 CLDND2Q8NHS1 167 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 MUC7Q8TAX7 377 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 CAPZA3Q96KX2 299 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 HSPB9Q9BQS6 159 aa2.52□□□□□ -2.01
VPS13D-207ENST00000476169 C16orf95Q9H693 158 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms