RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 RBMY1CP0DJD4 496 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 PSG1P11464 419 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 ANXA3P12429 323 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 TCTAP57738 103 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 SRPXP78539 464 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 RBMY1FQ15415 496 aaKnown RBP12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 SEPSECSQ9HD40 501 aaKnown RBP12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 NRN1Q9NPD7 142 aa12.03□□□□□ -0.48
CCDC28B-204ENST00000469003 C11orf94C9JXX5 98 aa12.02□□□□□ -0.49
CCDC28B-204ENST00000469003 FAM90A26D6RGX4 464 aa12.02□□□□□ -0.49
CCDC28B-204ENST00000469003 DEDDO75618 318 aa12.02□□□□□ -0.49
CCDC28B-204ENST00000469003 ATP5IP56385 69 aaPredicted RBP12.02□□□□□ -0.49
CCDC28B-204ENST00000469003 SNRPD3P62318 126 aaKnown RBP12.02□□□□□ -0.49
CCDC28B-204ENST00000469003 SIGLEC15Q6ZMC9 328 aa12.02□□□□□ -0.49
CCDC28B-204ENST00000469003 MCFD2Q8NI22 146 aa12.02□□□□□ -0.49
CCDC28B-204ENST00000469003 X6R8D5 127 aa12.02□□□□□ -0.49
CCDC28B-204ENST00000469003 PIGBOS1A0A0B4J2F0 54 aa12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 FAUP35544 74 aaKnown RBP12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 GPX4P36969 197 aaPredicted RBP12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 NUP62P37198 522 aaPredicted RBP12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 KLF9Q13886 244 aaPredicted RBP12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 CSNK1G2-AS1Q8NCQ2 148 aa12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 OR51G1Q8NGK1 321 aa12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 OR1S1Q8NH92 325 aa12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 RNF125Q96EQ8 232 aa12.01□□□□□ -0.49
CCDC28B-204ENST00000469003 DUXBA0A1W2PPF3 345 aa12□□□□□ -0.49
CCDC28B-204ENST00000469003 OR8G2PQ6IF36 304 aa12□□□□□ -0.49
CCDC28B-204ENST00000469003 CLEC5AQ9NY25 188 aa12□□□□□ -0.49
CCDC28B-204ENST00000469003 PFDN2Q9UHV9 154 aa12□□□□□ -0.49
CCDC28B-204ENST00000469003 TBC1D24Q9ULP9 559 aa12□□□□□ -0.49
CCDC28B-204ENST00000469003 ELOA3CA0A087WX78 387 aaPredicted RBP11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 PITX3O75364 302 aa11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 HLA-DMBP28068 263 aa11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 NUTF2P61970 127 aaKnown RBP11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 GAMTQ14353 236 aa11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 TMEM128Q5BJH2 165 aa11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 TRIM63Q969Q1 353 aa11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 SLC35E1Q96K37 410 aa11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 C1QTNF4Q9BXJ3 329 aa11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 APLNQ9ULZ1 77 aa11.99□□□□□ -0.49
CCDC28B-204ENST00000469003 IGKV1D-37A0A075B6S9 117 aa11.98□□□□□ -0.49
CCDC28B-204ENST00000469003 ZFP92A6NM28 416 aa11.98□□□□□ -0.49
CCDC28B-204ENST00000469003 IGLL5B9A064 214 aa11.98□□□□□ -0.49
CCDC28B-204ENST00000469003 H3BMM0 161 aa11.98□□□□□ -0.49
CCDC28B-204ENST00000469003 AP3S2P59780 193 aa11.98□□□□□ -0.49
CCDC28B-204ENST00000469003 TMED4Q7Z7H5 227 aa11.98□□□□□ -0.49
CCDC28B-204ENST00000469003 PBDC1Q9BVG4 233 aa11.98□□□□□ -0.49
CCDC28B-204ENST00000469003 RYR1P21817 5038 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 FABP1P07148 127 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 SLC25A6P12236 298 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 HLA-DRB4P13762 266 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 NKX2-1P43699 371 aaPredicted RBP11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 ZNF90Q03938 601 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 PYDC2Q56P42 97 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 CENPSQ8N2Z9 138 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 TOMM5Q8N4H5 51 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 LRTM2Q8N967 370 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 HLA-DRB4X5D2U9 266 aa11.97□□□□□ -0.49
CCDC28B-204ENST00000469003 VPS13DQ5THJ4 4388 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 TRAV10A0A0B4J240 114 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 RAB11AP62491 216 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 PRR20EP86478 221 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 PRR20CP86479 221 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 PRR20DP86480 221 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 PRR20BP86481 221 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 PRR20AP86496 221 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 Q6ZTC4 211 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 DEDD2Q8WXF8 326 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 XCL2Q9UBD3 114 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 V9GYH0 126 aa11.96□□□□□ -0.49
CCDC28B-204ENST00000469003 SNRPGP15A8MWD9 76 aa11.95□□□□□ -0.5
CCDC28B-204ENST00000469003 MED6O75586 246 aa11.95□□□□□ -0.5
CCDC28B-204ENST00000469003 IAPPP10997 89 aa11.95□□□□□ -0.5
CCDC28B-204ENST00000469003 VAMP1P23763 118 aa11.95□□□□□ -0.5
CCDC28B-204ENST00000469003 LYZP61626 148 aa11.95□□□□□ -0.5
CCDC28B-204ENST00000469003 C1orf194Q5T5A4 169 aa11.95□□□□□ -0.5
CCDC28B-204ENST00000469003 TRGV9Q99603 122 aa11.95□□□□□ -0.5
CCDC28B-204ENST00000469003 SLC25A21Q9BQT8 299 aaPredicted RBP11.95□□□□□ -0.5
CCDC28B-204ENST00000469003 DNAH10Q8IVF4 4471 aa11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 ID1P41134 155 aa11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 PSMB3P49720 205 aa11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 OR2F1Q13607 317 aa11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 ZNF79Q15937 498 aa11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 THAP8Q8NA92 274 aa11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 CIB3Q96Q77 187 aaPredicted RBP11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 WDR12Q9GZL7 423 aaKnown RBP11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 CELA1Q9UNI1 258 aa11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 TMED3Q9Y3Q3 217 aa11.94□□□□□ -0.5
CCDC28B-204ENST00000469003 DNAH6Q9C0G6 4158 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 IGHV4-4A0A075B6R2 117 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 SOCS3O14543 225 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 SFT2D2O95562 160 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 S100A5P33763 92 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 RPP30P78346 268 aaKnown RBP11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 PPP1R1AQ13522 171 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 C12orf74Q32Q52 190 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 GDF5OSQ5U4N7 250 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 FOXI2Q6ZQN5 318 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 LINC00052Q96N35 136 aa11.93□□□□□ -0.5
CCDC28B-204ENST00000469003 RNF126Q9BV68 326 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms