RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 WT1-ASQ06250 92 aa17.14■□□□□ 0.33
USP48-205ENST00000421625 PDPNQ86YL7 162 aa17.14■□□□□ 0.33
USP48-205ENST00000421625 PPBPP02775 128 aa17.14■□□□□ 0.33
USP48-205ENST00000421625 CHCHD1Q96BP2 118 aaKnown RBP17.14■□□□□ 0.33
USP48-205ENST00000421625 PMCHL2Q9BQD1 86 aa17.14■□□□□ 0.33
USP48-205ENST00000421625 GSX1Q9H4S2 264 aaPredicted RBP17.14■□□□□ 0.33
USP48-205ENST00000421625 SCRT2Q9NQ03 307 aa17.14■□□□□ 0.33
USP48-205ENST00000421625 CLEC2AQ6UVW9 174 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 GPR82Q96P67 336 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 ZNF292O60281 2723 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 ZNF318Q5VUA4 2279 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 H3BTX0 84 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 TMEM11P17152 192 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 OCIAD2Q56VL3 154 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 FAM162BQ5T6X4 162 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 RUSC1-AS1Q66K80 236 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 RBMXL3Q8N7X1 1067 aaKnown RBP17.13■□□□□ 0.33
USP48-205ENST00000421625 GAFA1Q96PS6 74 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 VPS25Q9BRG1 176 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 MLST8Q9BVC4 326 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 TMEM191AQ9H0A3 160 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 NCOR1P1Q9H4R4 102 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 RPUSD1Q9UJJ7 312 aaKnown RBP17.13■□□□□ 0.33
USP48-205ENST00000421625 SVILO95425 2214 aa17.13■□□□□ 0.33
USP48-205ENST00000421625 A0A087X0K7 114 aa17.12■□□□□ 0.33
USP48-205ENST00000421625 REG1BP48304 166 aa17.12■□□□□ 0.33
USP48-205ENST00000421625 TMEM177Q53S58 311 aa17.12■□□□□ 0.33
USP48-205ENST00000421625 ZNF835Q9Y2P0 537 aa17.12■□□□□ 0.33
USP48-205ENST00000421625 TIMM8BQ9Y5J9 83 aaPredicted RBP17.12■□□□□ 0.33
USP48-205ENST00000421625 PTPRZ1P23471 2315 aaPredicted RBP17.12■□□□□ 0.33
USP48-205ENST00000421625 CGB1A6NKQ9 187 aa17.12■□□□□ 0.33
USP48-205ENST00000421625 ORM2P19652 201 aa17.12■□□□□ 0.33
USP48-205ENST00000421625 FOXE3Q13461 319 aa17.12■□□□□ 0.33
USP48-205ENST00000421625 PRSS22Q9GZN4 317 aa17.12■□□□□ 0.33
USP48-205ENST00000421625 A8MWL6 223 aa17.11■□□□□ 0.33
USP48-205ENST00000421625 HSBP1L1C9JCN9 74 aa17.11■□□□□ 0.33
USP48-205ENST00000421625 CACNA1GO43497 2377 aa17.11■□□□□ 0.33
USP48-205ENST00000421625 P01737 135 aa17.11■□□□□ 0.33
USP48-205ENST00000421625 KLF12Q9Y4X4 402 aa17.11■□□□□ 0.33
USP48-205ENST00000421625 BHLHA15Q7RTS1 189 aaPredicted RBP17.11■□□□□ 0.33
USP48-205ENST00000421625 DEFB124Q8NES8 71 aa17.11■□□□□ 0.33
USP48-205ENST00000421625 ZC2HC1AQ96GY0 325 aa17.11■□□□□ 0.33
USP48-205ENST00000421625 ZNF71Q9NQZ8 489 aaPredicted RBP17.11■□□□□ 0.33
USP48-205ENST00000421625 SMG1Q96Q15 3661 aaKnown RBP17.11■□□□□ 0.33
USP48-205ENST00000421625 SPAARA0A1B0GVQ0 90 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 OR1B1Q8NGR6 318 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 FAM222BQ8WU58 562 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 SLC25A15Q9Y619 301 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 DYSFO75923 2080 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 C19orf71A6NCJ1 209 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 M0R1B8 84 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 IGHG3P01860 377 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 PSG9Q00887 426 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 C12orf54Q6X4T0 127 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 OSR1Q8TAX0 266 aaPredicted RBP17.1■□□□□ 0.33
USP48-205ENST00000421625 PLXNB1O43157 2135 aa17.1■□□□□ 0.33
USP48-205ENST00000421625 Q71RC1 249 aaPredicted RBP17.09■□□□□ 0.33
USP48-205ENST00000421625 MAP1LC3CQ9BXW4 147 aa17.09■□□□□ 0.33
USP48-205ENST00000421625 MAP1BP46821 2468 aaKnown RBP17.09■□□□□ 0.33
USP48-205ENST00000421625 ZNF833PQ6ZTB9 187 aa17.09■□□□□ 0.33
USP48-205ENST00000421625 PLSCR4Q9NRQ2 329 aa17.09■□□□□ 0.33
USP48-205ENST00000421625 TRAV8-6A0A0B4J262 113 aa17.08■□□□□ 0.33
USP48-205ENST00000421625 CSN3P07498 182 aa17.08■□□□□ 0.33
USP48-205ENST00000421625 THAP8Q8NA92 274 aa17.08■□□□□ 0.33
USP48-205ENST00000421625 RNF7Q9UBF6 113 aa17.08■□□□□ 0.33
USP48-205ENST00000421625 C22orf46C9J442 243 aa17.08■□□□□ 0.32
USP48-205ENST00000421625 CHEK1O14757 476 aa17.08■□□□□ 0.32
USP48-205ENST00000421625 APOA2P02652 100 aa17.08■□□□□ 0.32
USP48-205ENST00000421625 LIPFP07098 398 aa17.08■□□□□ 0.32
USP48-205ENST00000421625 RBPMS2Q6ZRY4 209 aaKnown RBP17.08■□□□□ 0.32
USP48-205ENST00000421625 TMUB1Q9BVT8 246 aa17.08■□□□□ 0.32
USP48-205ENST00000421625 MUC6Q6W4X9 2439 aa17.08■□□□□ 0.32
USP48-205ENST00000421625 LTAP01374 205 aa17.07■□□□□ 0.32
USP48-205ENST00000421625 NBEAP1P0C6P0 100 aa17.07■□□□□ 0.32
USP48-205ENST00000421625 SRSF6Q13247 344 aaKnown RBP17.07■□□□□ 0.32
USP48-205ENST00000421625 LINC00574Q9H8X3 128 aa17.07■□□□□ 0.32
USP48-205ENST00000421625 CEP250Q9BV73 2442 aa17.07■□□□□ 0.32
USP48-205ENST00000421625 SNAI2O43623 268 aa17.07■□□□□ 0.32
USP48-205ENST00000421625 RPS20P60866 119 aaKnown RBP17.07■□□□□ 0.32
USP48-205ENST00000421625 DIAPH2-AS1Q14236 149 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 PET117Q6UWS5 81 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 H1FXQ92522 213 aaKnown RBP17.06■□□□□ 0.32
USP48-205ENST00000421625 SMIM12Q96EX1 92 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 PERPQ96FX8 193 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 SOX21Q9Y651 276 aaPredicted RBP17.06■□□□□ 0.32
USP48-205ENST00000421625 MGAQ8IWI9 3026 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 GVINP1Q7Z2Y8 2422 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 TOX4O94842 621 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 CT83Q5H943 113 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 FLYWCH2Q96CP2 140 aaKnown RBP17.06■□□□□ 0.32
USP48-205ENST00000421625 DAZAP1Q96EP5 407 aaKnown RBP17.06■□□□□ 0.32
USP48-205ENST00000421625 PROCRQ9UNN8 238 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 TRAV8-1A0A0A6YYK1 113 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 PRR33A8MZF0 331 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 NDFIP1Q9BT67 221 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 ZNF492Q9P255 531 aa17.06■□□□□ 0.32
USP48-205ENST00000421625 CD5LO43866 347 aa17.05■□□□□ 0.32
USP48-205ENST00000421625 HIST1H1AQ02539 215 aaPredicted RBP17.05■□□□□ 0.32
USP48-205ENST00000421625 ZNF788Q6ZQV5 615 aa17.05■□□□□ 0.32
USP48-205ENST00000421625 FMC1Q96HJ9 113 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms