RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TRGV9Q99603 122 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 ACACAQ13085 2346 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 ADARB2-AS1A8MUL3 147 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 DPM2O94777 84 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 PRDM13Q9H4Q3 707 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 SERF1AO75920 110 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 ZNF415Q09FC8 603 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 OR9G4Q8NGQ1 327 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 IGKV1-27A0A075B6S5 117 aa15.8■□□□□ 0.12
UPF1-201ENST00000262803 TRBV6-6A0A0A6YYG2 114 aa15.79■□□□□ 0.12
UPF1-201ENST00000262803 PHLDA1Q8WV24 401 aaPredicted RBP15.79■□□□□ 0.12
UPF1-201ENST00000262803 CYTL1Q9NRR1 136 aa15.79■□□□□ 0.12
UPF1-201ENST00000262803 CLPSP04118 112 aa15.79■□□□□ 0.12
UPF1-201ENST00000262803 ZNF585BQ52M93 769 aa15.79■□□□□ 0.12
UPF1-201ENST00000262803 LINC01356Q8N9X3 169 aa15.79■□□□□ 0.12
UPF1-201ENST00000262803 MBD3L1Q8WWY6 194 aa15.79■□□□□ 0.12
UPF1-201ENST00000262803 A0A1B0GWJ7 208 aa15.79■□□□□ 0.12
UPF1-201ENST00000262803 VSIRQ9H7M9 311 aa15.79■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BKO60814 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 IGHG3P01860 377 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BJP06899 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BOP23527 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BBP33778 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BDP58876 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BCP62807 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST2H2BEQ16778 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.78■□□□□ 0.12
UPF1-201ENST00000262803 RASL11AQ6T310 242 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 ZCCHC24Q8N2G6 241 aaKnown RBP15.78■□□□□ 0.12
UPF1-201ENST00000262803 MDS2Q8NDY4 140 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BHQ93079 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BNQ99877 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 HIST1H2BMQ99879 126 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 SEPSECSQ9HD40 501 aaKnown RBP15.78■□□□□ 0.12
UPF1-201ENST00000262803 SAP30O75446 220 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 CD28P10747 220 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 GNB1LQ9BYB4 327 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 SCN5AQ14524 2016 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 LY6DQ14210 128 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 NSUN5P1Q3KNT7 163 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 TSKUQ8WUA8 353 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 LINC00477Q96M19 166 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 PGPEP1LA6NFU8 196 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 TEX38Q6PEX7 206 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 ST6GALNAC6Q969X2 333 aa15.78■□□□□ 0.12
UPF1-201ENST00000262803 GNG5P63218 68 aa15.77■□□□□ 0.12
UPF1-201ENST00000262803 SLC25A48Q6ZT89 311 aaKnown RBP15.77■□□□□ 0.12
UPF1-201ENST00000262803 MSRB2Q9Y3D2 182 aa15.77■□□□□ 0.12
UPF1-201ENST00000262803 AMBPP02760 352 aa15.77■□□□□ 0.12
UPF1-201ENST00000262803 LYPD1Q8N2G4 141 aa15.77■□□□□ 0.12
UPF1-201ENST00000262803 IGHV1-3A0A0C4DH29 117 aa15.77■□□□□ 0.11
UPF1-201ENST00000262803 C5orf30Q96GV9 206 aa15.77■□□□□ 0.11
UPF1-201ENST00000262803 DOPEY2Q9Y3R5 2298 aa15.77■□□□□ 0.11
UPF1-201ENST00000262803 OR2K2Q8NGT1 345 aa15.77■□□□□ 0.11
UPF1-201ENST00000262803 CHCHD5Q9BSY4 110 aa15.77■□□□□ 0.11
UPF1-201ENST00000262803 NRN1Q9NPD7 142 aa15.77■□□□□ 0.11
UPF1-201ENST00000262803 RPL36AP83881 106 aaKnown RBP15.76■□□□□ 0.11
UPF1-201ENST00000262803 PRB3Q04118 309 aaPredicted RBP15.76■□□□□ 0.11
UPF1-201ENST00000262803 EFNB3Q15768 340 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 C3orf36Q3SXR2 165 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 Q6ZS92 163 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 RPL36ALQ969Q0 106 aaKnown RBP15.76■□□□□ 0.11
UPF1-201ENST00000262803 SNAI2O43623 268 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 MPDZO75970 2070 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 ADMP35318 185 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 OCC1Q8TAD7 63 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 C5orf63A6NC05 138 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 PYYP10082 97 aa15.76■□□□□ 0.11
UPF1-201ENST00000262803 GBF1Q92538 1859 aa15.75■□□□□ 0.11
UPF1-201ENST00000262803 PNRC2Q9NPJ4 139 aaKnown RBP15.75■□□□□ 0.11
UPF1-201ENST00000262803 CHTOPQ9Y3Y2 248 aaKnown RBP15.75■□□□□ 0.11
UPF1-201ENST00000262803 TMEM200BQ69YZ2 307 aa15.75■□□□□ 0.11
UPF1-201ENST00000262803 RNF144BQ7Z419 303 aa15.75■□□□□ 0.11
UPF1-201ENST00000262803 FNDC10F2Z333 226 aa15.74■□□□□ 0.11
UPF1-201ENST00000262803 NDUFA3O95167 84 aa15.74■□□□□ 0.11
UPF1-201ENST00000262803 SSBP4Q9BWG4 385 aaPredicted RBP15.74■□□□□ 0.11
UPF1-201ENST00000262803 A0A087WX48 190 aa15.74■□□□□ 0.11
UPF1-201ENST00000262803 A0A1B0GWB2 263 aa15.74■□□□□ 0.11
UPF1-201ENST00000262803 C5orf64Q2M2E5 130 aa15.74■□□□□ 0.11
UPF1-201ENST00000262803 RCHY1Q96PM5 261 aa15.74■□□□□ 0.11
UPF1-201ENST00000262803 ITGB1BP1O14713 200 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 INSP01308 110 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 C15orf32Q32M92 178 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 BMPERQ8N8U9 685 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 COLCA2A8K830 154 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 UBE2CO00762 179 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 PLEKHB2Q96CS7 222 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 OVOL2Q9BRP0 275 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 LY96Q9Y6Y9 160 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 GNLYP22749 145 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 FOXF2Q12947 444 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 TMEM242Q9NWH2 141 aa15.73■□□□□ 0.11
UPF1-201ENST00000262803 PSPNO60542 156 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 TREML4Q6UXN2 200 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 COQ2Q96H96 371 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 NMSQ5H8A3 153 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 LINC00614P0C842 121 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 FBLN7Q53RD9 439 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 TRAV1-1A0A0B4J248 108 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 CD33P20138 364 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms