RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CORTO00230 105 aa7.85□□□□□ -1.15
CD44-227ENST00000528086 NPY1RP25929 384 aa7.85□□□□□ -1.15
CD44-227ENST00000528086 TFPI2P48307 235 aa7.85□□□□□ -1.15
CD44-227ENST00000528086 SUB1P53999 127 aaKnown RBP eCLIP7.85□□□□□ -1.15
CD44-227ENST00000528086 USF2Q15853 346 aaPredicted RBP7.85□□□□□ -1.15
CD44-227ENST00000528086 DTD1Q8TEA8 209 aa7.85□□□□□ -1.15
CD44-227ENST00000528086 DEDD2Q8WXF8 326 aa7.85□□□□□ -1.15
CD44-227ENST00000528086 NPIPB3Q92617 1050 aa7.85□□□□□ -1.15
CD44-227ENST00000528086 SLC25A21Q9BQT8 299 aaPredicted RBP7.85□□□□□ -1.15
CD44-227ENST00000528086 MAP6D1Q9H9H5 199 aa7.85□□□□□ -1.15
CD44-227ENST00000528086 ENY2Q9NPA8 101 aa7.85□□□□□ -1.15
CD44-227ENST00000528086 IGKV1OR2-108A0A075B7D4 117 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 LINC00854A0A1B0GVQ3 168 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 ADAP1O75689 374 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 NDUFB6O95139 128 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 GIG44P09565 113 aaPredicted RBP7.84□□□□□ -1.15
CD44-227ENST00000528086 IL7P13232 177 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 VAMP1P23763 118 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 FAUP35544 74 aaKnown RBP7.84□□□□□ -1.15
CD44-227ENST00000528086 AP3S2P59780 193 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 SPANXN2Q5MJ10 180 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 GGNBP1Q5YKI7 109 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 LAMTOR1Q6IAA8 161 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 GSG1LQ6UXU4 331 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 MS4A6AQ9H2W1 248 aa7.84□□□□□ -1.15
CD44-227ENST00000528086 VPS13DQ5THJ4 4388 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 DUXBA0A1W2PPF3 345 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 C9orf170A2RU37 121 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 OR4C46A6NHA9 309 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 K7EQG2 157 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 IAPPP10997 89 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 SLC25A6P12236 298 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 LYL1P12980 280 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 RPL35AP18077 110 aaKnown RBP7.83□□□□□ -1.16
CD44-227ENST00000528086 ANXA7P20073 488 aaKnown RBP7.83□□□□□ -1.16
CD44-227ENST00000528086 OR10J1P30954 320 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 YPEL3P61236 119 aaPredicted RBP7.83□□□□□ -1.16
CD44-227ENST00000528086 GAMTQ14353 236 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 WFDC3Q8IUB2 231 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 CENPSQ8N2Z9 138 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 OR1S2Q8NGQ3 325 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 DCANP1Q8TF63 244 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 GLMPQ8WWB7 406 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 MAGT1Q9H0U3 335 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 U3KQ87 197 aa7.83□□□□□ -1.16
CD44-227ENST00000528086 IFNA10P01566 189 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 HOXB5P09067 269 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 PSG1P11464 419 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 SLC25A4P12235 298 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 NPPCP23582 126 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 P2RY1P47900 373 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 SRPXP78539 464 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 ZNF90Q03938 601 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 DHRS2Q13268 280 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 DEFB135Q30KP9 77 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 C16orf54Q6UWD8 224 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 TMEM182Q6ZP80 229 aaPredicted RBP7.82□□□□□ -1.16
CD44-227ENST00000528086 OR1S1Q8NH92 325 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 ACY3Q96HD9 319 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 C17orf77Q96MU5 243 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 GINS3Q9BRX5 216 aa7.82□□□□□ -1.16
CD44-227ENST00000528086 RPS10-NUDT3A0A1W2PQS6 291 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 PMS2P5A8MQ11 134 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 TOMM40O96008 361 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 ANXA3P12429 323 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 PAX9P55771 341 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 DEFB131AP59861 70 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 UBE2MP61081 183 aaKnown RBP7.81□□□□□ -1.16
CD44-227ENST00000528086 ID3Q02535 119 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 LEMD1Q68G75 181 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 Q6ZWC4 215 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 OR4D5Q8NGN0 318 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 RNF183Q96D59 192 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 TMED3Q9Y3Q3 217 aa7.81□□□□□ -1.16
CD44-227ENST00000528086 TRAV30A0A087WSZ9 112 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 TRAV2A0A0B4J234 112 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 KIR2DL5BA0A0G2JN68 375 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 KIR2DL5BA0A0G2JPC4 375 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 NAP1L6A6NFF2 107 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 A6NHS1 94 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 FAM90A26D6RGX4 464 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 BUB3O43684 328 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 CCNKO75909 580 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 OR4E1P0C645 316 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 GPX4P36969 197 aaPredicted RBP7.8□□□□□ -1.16
CD44-227ENST00000528086 TRIQKQ629K1 86 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 LYG2Q86SG7 212 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 KIR2DL5AQ8N109 375 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 OR51G1Q8NGK1 321 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 KIR2DL5BQ8NHK3 375 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 METTL26Q96S19 204 aa7.8□□□□□ -1.16
CD44-227ENST00000528086 A0A0J9YWU9 116 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 LCE6AA0A183 80 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 WRBO00258 174 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 SPRY2O43597 315 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 SYNGR2O43760 224 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 IFNA4P05014 189 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 IL4P05112 153 aa7.79□□□□□ -1.16
CD44-227ENST00000528086 HNRNPCP07910 306 aaKnown RBP eCLIP7.79□□□□□ -1.16
CD44-227ENST00000528086 RD3LP0DJH9 198 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms