RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 IGHV1-18A0A0C4DH31 117 aa14.36□□□□□ -0.11
NUP54-205ENST00000507257 IGHG3P01860 377 aa14.36□□□□□ -0.11
NUP54-205ENST00000507257 SAA1P0DJI8 122 aaPredicted RBP14.36□□□□□ -0.11
NUP54-205ENST00000507257 ZNF835Q9Y2P0 537 aa14.36□□□□□ -0.11
NUP54-205ENST00000507257 CORTO00230 105 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 IGKV1-16P04430 117 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 KIR2DL2P43627 348 aaPredicted RBP14.35□□□□□ -0.11
NUP54-205ENST00000507257 PRR27Q6MZM9 219 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 FAM71F2Q6NXP2 309 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 OR4A5Q8NH83 315 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 FMC1Q96HJ9 113 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 MAP1LC3CQ9BXW4 147 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 RPUSD1Q9UJJ7 312 aaKnown RBP14.35□□□□□ -0.11
NUP54-205ENST00000507257 TNCP24821 2201 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 GATA4P43694 442 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 TMEM164Q5U3C3 297 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 RBPMS2Q6ZRY4 209 aaKnown RBP14.35□□□□□ -0.11
NUP54-205ENST00000507257 ZNF833PQ6ZTB9 187 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 PDPNQ86YL7 162 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 TMEM190Q8WZ59 177 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 HSPB8Q9UJY1 196 aa14.35□□□□□ -0.11
NUP54-205ENST00000507257 NPIPB6E9PJ23 425 aa14.34□□□□□ -0.11
NUP54-205ENST00000507257 LDLRAD2Q5SZI1 272 aa14.34□□□□□ -0.11
NUP54-205ENST00000507257 H1FXQ92522 213 aaKnown RBP14.34□□□□□ -0.11
NUP54-205ENST00000507257 DYSFO75923 2080 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 IGKV1D-37A0A075B6S9 117 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 hDV102S1A0JD36 115 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 LTAP01374 205 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 ZNF883P0CG24 379 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 RNF151Q2KHN1 245 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 TMEM177Q53S58 311 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 LINC01545Q5VT33 79 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 OR10W1Q8NGF6 305 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 GTSF1Q8WW33 167 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 DPF1Q92782 380 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 PERPQ96FX8 193 aa14.33□□□□□ -0.11
NUP54-205ENST00000507257 PEF1Q9UBV8 284 aaKnown RBP14.33□□□□□ -0.11
NUP54-205ENST00000507257 CACNA1GO43497 2377 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 PRUNE2Q8WUY3 3088 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 LOC102724200A0A096LPH7 203 aaPredicted RBP14.33□□□□□ -0.12
NUP54-205ENST00000507257 MUC21A0A0G2JKD1 596 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 MUC21A0A140T8X8 626 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 PSG1P11464 419 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 SUB1P53999 127 aaKnown RBP eCLIP14.33□□□□□ -0.12
NUP54-205ENST00000507257 MUC21Q5SSG8 566 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 TCF24Q7RTU0 167 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 MOGAT3Q86VF5 341 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 UBALD2Q8IYN6 164 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 ST6GALNAC6Q969X2 333 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 PLSCR4Q9NRQ2 329 aa14.33□□□□□ -0.12
NUP54-205ENST00000507257 DSCAMO60469 2012 aa14.32□□□□□ -0.12
NUP54-205ENST00000507257 OR2T8A6NH00 312 aa14.32□□□□□ -0.12
NUP54-205ENST00000507257 SH2D7A6NKC9 451 aaPredicted RBP14.32□□□□□ -0.12
NUP54-205ENST00000507257 K7ERU9 68 aa14.32□□□□□ -0.12
NUP54-205ENST00000507257 P01737 135 aa14.32□□□□□ -0.12
NUP54-205ENST00000507257 SLC25A5P05141 298 aaKnown RBP14.32□□□□□ -0.12
NUP54-205ENST00000507257 ASPHD1Q5U4P2 390 aa14.32□□□□□ -0.12
NUP54-205ENST00000507257 C5orf17Q8NAS9 161 aa14.32□□□□□ -0.12
NUP54-205ENST00000507257 GATD1Q8NB37 220 aa14.32□□□□□ -0.12
NUP54-205ENST00000507257 TMEM167AQ8TBQ9 72 aa14.32□□□□□ -0.12
NUP54-205ENST00000507257 M0QZ24 198 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 HAX1O00165 279 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 MOSP00540 346 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 APOA2P02652 100 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 LINC00173Q6ZV60 143 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 ZCCHC24Q8N2G6 241 aaKnown RBP14.31□□□□□ -0.12
NUP54-205ENST00000507257 CNEP1R1Q8N9A8 125 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 VPS25Q9BRG1 176 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 FNDC4Q9H6D8 234 aaPredicted RBP14.31□□□□□ -0.12
NUP54-205ENST00000507257 COX8AP10176 69 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 FOXA3P55318 350 aaPredicted RBP14.31□□□□□ -0.12
NUP54-205ENST00000507257 GNG5P63218 68 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 SEC11AP67812 179 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 PSG9Q00887 426 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 MSMPQ1L6U9 139 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 AMMECR1LQ6DCA0 310 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 LINC00305Q7Z4B0 112 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 OR5AN1Q8NGI8 311 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 VSTM2AQ8TAG5 236 aa14.31□□□□□ -0.12
NUP54-205ENST00000507257 A0A1W2PNU3 283 aaPredicted RBP14.3□□□□□ -0.12
NUP54-205ENST00000507257 SSBP2P81877 361 aaPredicted RBP14.3□□□□□ -0.12
NUP54-205ENST00000507257 PVRIGQ6DKI7 326 aa14.3□□□□□ -0.12
NUP54-205ENST00000507257 C16orf54Q6UWD8 224 aa14.3□□□□□ -0.12
NUP54-205ENST00000507257 NPIPB3Q92617 1050 aa14.3□□□□□ -0.12
NUP54-205ENST00000507257 HARBI1Q96MB7 349 aa14.3□□□□□ -0.12
NUP54-205ENST00000507257 PCNX2A6NKB5 2137 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 PGPA6NDG6 321 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 PRR33A8MZF0 331 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 M0R296 226 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 GPR183P32249 361 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 LINC00322Q6ZN03 302 aaPredicted RBP14.29□□□□□ -0.12
NUP54-205ENST00000507257 RBMXL3Q8N7X1 1067 aaKnown RBP14.29□□□□□ -0.12
NUP54-205ENST00000507257 GAFA1Q96PS6 74 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 ZNF71Q9NQZ8 489 aaPredicted RBP14.29□□□□□ -0.12
NUP54-205ENST00000507257 RNF7Q9UBF6 113 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 SLC25A15Q9Y619 301 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 AHCTF1Q8WYP5 2266 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 TRBV6-1A0A0K0K1D8 114 aa14.29□□□□□ -0.12
NUP54-205ENST00000507257 APOHP02749 345 aaPredicted RBP14.29□□□□□ -0.12
NUP54-205ENST00000507257 NBEAP1P0C6P0 100 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms