RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 EPDR1Q9UM22 224 aa0.65□□□□□ -2.31
SMC4-223ENST00000493695 TRBV6-7A0A0A0MS04 114 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 RPP14O95059 124 aaKnown RBP0.64□□□□□ -2.31
SMC4-223ENST00000493695 RPS17P08708 135 aaKnown RBP0.64□□□□□ -2.31
SMC4-223ENST00000493695 OR4E1P0C645 316 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 CEBPGP53567 150 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 HIST1H3AP68431 136 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 H3F3AP84243 136 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 AESQ08117 197 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 TRAPPC6BQ86SZ2 158 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 SFT2D1Q8WV19 159 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 GPR146Q96CH1 333 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 C2orf50Q96LR7 162 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 TMEM133Q9H2Q1 129 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 OSTCQ9NRP0 149 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 KLK9Q9UKQ9 250 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 CYSLTR1Q9Y271 337 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 ZFP30Q9Y2G7 519 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 LAMB4A4D0S4 1761 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 DENND4CQ5VZ89 1909 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 MYO3BQ8WXR4 1341 aa0.64□□□□□ -2.31
SMC4-223ENST00000493695 MCM3APO60318 1980 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 IGKV1-9A0A0C4DH69 117 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 ZNF93P35789 620 aaPredicted RBP0.63□□□□□ -2.31
SMC4-223ENST00000493695 MYL6P60660 151 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 CCL7P80098 99 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 TMEM97Q5BJF2 176 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 C1orf137Q5JT78 98 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 C3orf56Q8N813 242 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 Q8N814 137 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 OR52L1Q8NGH7 329 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 PRAP1Q96NZ9 151 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 CMSS1Q9BQ75 279 aaKnown RBP0.63□□□□□ -2.31
SMC4-223ENST00000493695 RNASE7Q9H1E1 156 aaKnown RBP0.63□□□□□ -2.31
SMC4-223ENST00000493695 PLXND1Q9Y4D7 1925 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 NCOA6Q14686 2063 aaPredicted RBP0.63□□□□□ -2.31
SMC4-223ENST00000493695 CCDC144AA2RUR9 1427 aa0.63□□□□□ -2.31
SMC4-223ENST00000493695 ARHGEF28Q8N1W1 1705 aaKnown RBP0.62□□□□□ -2.31
SMC4-223ENST00000493695 C7orf71A4D174 169 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 SERPINE1P05121 402 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 PPIBP23284 216 aaKnown RBP0.62□□□□□ -2.31
SMC4-223ENST00000493695 S100A4P26447 101 aaKnown RBP0.62□□□□□ -2.31
SMC4-223ENST00000493695 SRSF6Q13247 344 aaKnown RBP0.62□□□□□ -2.31
SMC4-223ENST00000493695 TSNQ15631 228 aaKnown RBP0.62□□□□□ -2.31
SMC4-223ENST00000493695 RNASE10Q5GAN6 216 aaKnown RBP0.62□□□□□ -2.31
SMC4-223ENST00000493695 LCA10Q71F78 164 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 OOSP2Q86WS3 158 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 KRT222Q8N1A0 295 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 UCK1Q9HA47 277 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 C14orf105Q9NVL8 296 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 SLC22A13Q9Y226 551 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 PRELID3BQ9Y3B1 194 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 EML6Q6ZMW3 1958 aa0.62□□□□□ -2.31
SMC4-223ENST00000493695 RTL1A6NKG5 1358 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 A0A087X0T9 212 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 TRBV6-8A0A0A6YYG3 113 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 MGST1P10620 155 aaKnown RBP0.61□□□□□ -2.31
SMC4-223ENST00000493695 CASP1P29466 404 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 RNASE4P34096 147 aaKnown RBP0.61□□□□□ -2.31
SMC4-223ENST00000493695 CDKN2CP42773 168 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 ITGB3BPQ13352 177 aaPredicted RBP0.61□□□□□ -2.31
SMC4-223ENST00000493695 DEFB113Q30KQ7 82 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 GDF5OSQ5U4N7 250 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 Q6Q795 121 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 WFDC5Q8TCV5 224 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 TRIM4Q9C037 500 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 CCDC90BQ9GZT6 254 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 TLNRD1Q9H1K6 362 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 CEP192Q8TEP8 1941 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 LAMA4Q16363 1823 aa0.61□□□□□ -2.31
SMC4-223ENST00000493695 TNRC6AQ8NDV7 1962 aaKnown RBP0.6□□□□□ -2.31
SMC4-223ENST00000493695 hCG_1818297A0A087WSY0 165 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 A8MT66 165 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 SULT1B1O43704 296 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 PDE6DO43924 150 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 PROSCO94903 275 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 C8GP07360 202 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 AP3S2P59780 193 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 ERVS71-1P61550 626 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 ESRGQ1W209 222 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 OR51A2Q8NGJ7 313 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 OR8D4Q8NGM9 314 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 HIST1H2BLQ99880 126 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 OR51V1Q9H2C8 321 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 UQCC1Q9NVA1 299 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 TVP23BQ9NYZ1 205 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 UBAP1Q9NZ09 502 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 GLTPQ9NZD2 209 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 SLC35A3Q9Y2D2 325 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 V9GYY5 206 aaPredicted RBP0.6□□□□□ -2.31
SMC4-223ENST00000493695 RIMBP3CA6NJZ7 1639 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 RIMBP3BA6NNM3 1639 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 RIMBP3Q9UFD9 1639 aa0.6□□□□□ -2.31
SMC4-223ENST00000493695 J3QRK9 145 aa0.59□□□□□ -2.31
SMC4-223ENST00000493695 SRIP30626 198 aa0.59□□□□□ -2.31
SMC4-223ENST00000493695 BRMS1LQ5PSV4 323 aa0.59□□□□□ -2.31
SMC4-223ENST00000493695 SOSTDC1Q6X4U4 206 aa0.59□□□□□ -2.31
SMC4-223ENST00000493695 ITFG2Q969R8 447 aa0.59□□□□□ -2.31
SMC4-223ENST00000493695 PARVBQ9HBI1 364 aa0.59□□□□□ -2.31
SMC4-223ENST00000493695 RASL12Q9NYN1 266 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms