RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 K7EIM0 57 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 IGLV1-40P01703 118 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 IGHV3-48P01763 117 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 CAMLGP49069 296 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 CFHR3Q02985 330 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 MLANAQ16655 118 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 KHDC1LQ5JSQ8 128 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 KLHDC1Q8N7A1 406 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 STOML3Q8TAV4 291 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 CYTL1Q9NRR1 136 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 SERTAD4Q9NUC0 356 aa11.09□□□□□ -0.63
SKA1-202ENST00000398452 NUPL2O15504 423 aaKnown RBP11.08□□□□□ -0.64
SKA1-202ENST00000398452 CLN5O75503 358 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 IFNA7P01567 189 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 OR10J1P30954 320 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 SELENOTP62341 195 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 KLK9Q2XQG4 91 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 TMEM116Q8NCL8 245 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 OR5AU1Q8NGC0 362 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 OR2G3Q8NGZ4 309 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 PHYHIPLQ96FC7 376 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 GNB4Q9HAV0 340 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 KLK9Q9UKQ9 250 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 RNF114Q9Y508 228 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 TIMM9Q9Y5J7 89 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 DMRT1Q9Y5R6 373 aa11.08□□□□□ -0.64
SKA1-202ENST00000398452 CLPSL1A2RUU4 121 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 MFSD2BA6NFX1 497 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 ATP6V0CP27449 155 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 PSMB8P28062 276 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 DEFA5Q01523 94 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 AKR1C8PQ5T2L2 129 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 Q6ZRG5 221 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 LINC01006Q8NI28 216 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 ATP6V0BQ99437 205 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 GINS3Q9BRX5 216 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 NPCDR1Q9BY65 106 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 SLC25A32Q9H2D1 315 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 S4R3C0 116 aa11.07□□□□□ -0.64
SKA1-202ENST00000398452 TCRBV4S1A1TA0A5B7 111 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 AGPAT2O15120 278 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 CFDP00746 253 aaPredicted RBP11.06□□□□□ -0.64
SKA1-202ENST00000398452 IGHV3-23P01764 117 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 SEC11BP0C7V7 166 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 FCGR2BP31994 310 aaPredicted RBP11.06□□□□□ -0.64
SKA1-202ENST00000398452 FOXL1Q12952 345 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 CYP2G1PQ6ZSU1 146 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 THAP8Q8NA92 274 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 BPIFCQ8NFQ6 507 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 TRGV9Q99603 122 aa11.06□□□□□ -0.64
SKA1-202ENST00000398452 PSMG3Q9BT73 122 aaPredicted RBP11.06□□□□□ -0.64
SKA1-202ENST00000398452 NBEAL1Q6ZS30 2694 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 OR2T8A6NH00 312 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 TSPAN15O95858 294 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 IGHV3-11P01762 117 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 MBP02144 154 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 CLEC3BP05452 202 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 S100A7P31151 101 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 GPR183P32249 361 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 B2MP61769 119 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 SERF2P84101 59 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 RUNX1Q01196 453 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 RELQ04864 619 aaPredicted RBP11.05□□□□□ -0.64
SKA1-202ENST00000398452 ZNF616Q08AN1 781 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 SPSB3Q6PJ21 355 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 CLEC19AQ6UXS0 136 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 S100A7AQ86SG5 101 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 ZNF502Q8TBZ5 544 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 Q8WTZ3 238 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 MGST2Q99735 147 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 RSG1Q9BU20 258 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 KLK15Q9H2R5 256 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 UBQLN2Q9UHD9 624 aa11.05□□□□□ -0.64
SKA1-202ENST00000398452 LSM4Q9Y4Z0 139 aaKnown RBP11.05□□□□□ -0.64
SKA1-202ENST00000398452 NUDT19A8MXV4 375 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 UMAD1C9J7I0 102 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 RPLP1P05386 114 aaKnown RBP11.04□□□□□ -0.64
SKA1-202ENST00000398452 RD3LP0DJH9 198 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 ARL3P36405 182 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 RPL29P47914 159 aaKnown RBP11.04□□□□□ -0.64
SKA1-202ENST00000398452 RAB14P61106 215 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 ACOT6Q3I5F7 207 aaPredicted RBP11.04□□□□□ -0.64
SKA1-202ENST00000398452 TIGITQ495A1 244 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 FFAR4Q5NUL3 377 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 TEX261Q6UWH6 196 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 TMEM182Q6ZP80 229 aaPredicted RBP11.04□□□□□ -0.64
SKA1-202ENST00000398452 LCNL1Q6ZST4 164 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 ZNF767PQ75MW2 155 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 LRRC20Q8TCA0 184 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 TMED6Q8WW62 240 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 UBE2E2Q96LR5 201 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 GGTLC1Q9BX51 225 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 ARV1Q9H2C2 271 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 PXMP4Q9Y6I8 212 aa11.04□□□□□ -0.64
SKA1-202ENST00000398452 TGOLN2O43493 480 aa11.03□□□□□ -0.64
SKA1-202ENST00000398452 IGLC1P0CG04 106 aa11.03□□□□□ -0.64
SKA1-202ENST00000398452 SPP1P10451 314 aa11.03□□□□□ -0.64
SKA1-202ENST00000398452 RAB5CP51148 216 aa11.03□□□□□ -0.64
SKA1-202ENST00000398452 ELLP55199 621 aaPredicted RBP11.03□□□□□ -0.64
SKA1-202ENST00000398452 C10orf99Q6UWK7 81 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms