RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 EPOPA6NHQ4 379 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 CD5LO43866 347 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 IGKCP01834 107 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 FDCSPQ8NFU4 85 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 VKORC1Q9BQB6 163 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 GNB1LQ9BYB4 327 aa8.57□□□□□ -1.04
LIMCH1-203ENST00000396595 IGKV3OR2-268A0A0C4DH90 116 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 EFEMP2O95967 443 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 SAA1P0DJI8 122 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 KIR3DS1Q14943 382 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 ZNF497Q6ZNH5 498 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 LYZL4Q96KX0 146 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 SELENOKQ9Y6D0 94 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 ZNF236Q9UL36 1845 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 COX6B1P14854 86 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 FAM201AQ5SY85 155 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 MRPL14Q6P1L8 145 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 BCL6BQ8N143 479 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 ARPC1AQ92747 370 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 ABHD17AQ96GS6 310 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 PSMB11A5LHX3 300 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 FAM90A9PA6NNJ1 464 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 PLNP26678 52 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 PSG3Q16557 428 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 C1QL4Q86Z23 238 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 RNF182Q8N6D2 247 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 WFDC1Q9HC57 220 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 A0A087WV48 116 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 COLCA2A8K830 154 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 IGKV1D-33P01593 117 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 IGKV1-33P01594 117 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 ZNF883P0CG24 379 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 IGHV1-2P23083 117 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 PVRIGQ6DKI7 326 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 TEX38Q6PEX7 206 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 LHFPL1Q86WI0 220 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 ASCL2Q99929 193 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 ARID2Q68CP9 1835 aa8.56□□□□□ -1.04
LIMCH1-203ENST00000396595 B5MCH6 92 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 SP9P0CG40 484 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 AZU1P20160 251 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE1Q13065 139 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 PPP1R27Q86WC6 154 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 TMEM126AQ9H061 195 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 AKAP6Q13023 2319 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 A0A0A6YYD4 124 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 A0A1B0GW64 132 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 FABP5P3A8MUU1 101 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 EVI2AP22794 236 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 ATP5J2P56134 94 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 MPV17L2Q567V2 206 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 GFI1BQ5VTD9 330 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 OCC1Q8TAD7 63 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 CHCHD1Q96BP2 118 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 SAA2-SAA4A0A096LPE2 208 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 TRAV1-1A0A0B4J248 108 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 HBDP02042 147 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 NPSP0C0P6 89 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 SAA2P0DJI9 122 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 MTCL1Q9Y4B5 1905 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 IGHV3-49A0A0A0MS15 119 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 MUC21A0A0G2JKD1 596 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 MUC21A0A140T8X8 626 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 IGKV3-20P01619 116 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 FAM27E3Q08E93 113 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 SRSF7Q16629 238 aaKnown RBP eCLIP8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 MUC21Q5SSG8 566 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 PPBPP02775 128 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 CD55P08174 381 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 GZMBP10144 247 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 PAX1P15863 534 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 CD69Q07108 199 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 NEU4Q8WWR8 484 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 GGTLC1Q9BX51 225 aa8.55□□□□□ -1.04
LIMCH1-203ENST00000396595 CEP250Q9BV73 2442 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 LOC102723996A0A087X1L8 192 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 MORN2Q502X0 79 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 SLC50A1Q9BRV3 221 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 ZNF319Q9P2F9 582 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 S4R3C0 116 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 TCRBV4S1A1TA0A5B7 111 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 TMEM238C9JI98 176 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 IGHV3-23P01764 117 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 VWCEQ96DN2 955 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 GVINP1Q7Z2Y8 2422 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 SCN8AQ9UQD0 1980 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 IGKV1D-8A0A087WSZ0 117 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 TOMM40O96008 361 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 CT83Q5H943 113 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 DOCK3Q8IZD9 2030 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 PRR19A6NJB7 356 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 C17orf100A8MU93 164 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 PRCDQ00LT1 54 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 EFNB3Q15768 340 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 PYY3Q5JQD4 70 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 CENPVQ7Z7K6 275 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 CYTL1Q9NRR1 136 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 SDK2Q58EX2 2172 aa8.54□□□□□ -1.04
LIMCH1-203ENST00000396595 GAGE12HA6NDE8 117 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms