RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TRAV12-3A0A0B4J271 114 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 TCRBV5S2A0A599 114 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 C8orf88P0DMB2 117 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 MDKP21741 143 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 INSL3P51460 131 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 GAS1P54826 345 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 RAB32Q13637 225 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 MIC13Q5XKP0 118 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 LYZL2Q7Z4W2 148 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 OR8A1Q8NGG7 326 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 AMELYQ99218 206 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 POLEQ07864 2286 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 A0A096LPF7 62 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 A0A0J9YY99 117 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 MORN2Q502X0 79 aa7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 RNASEH2CQ8TDP1 164 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-202ENST00000381753 PSME4Q14997 1843 aa7.52□□□□□ -1.2
LIMCH1-202ENST00000381753 C9orf170A2RU37 121 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 C7orf66A4D0T2 115 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 ANAPC16Q96DE5 110 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 GGTLC1Q9BX51 225 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 SHISA9B4DS77 424 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 SFTA3P0C7M3 94 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 LGALS3P17931 250 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 OR11H2Q8NH07 326 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 NAT8Q9UHE5 227 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 PDE6DO43924 150 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 NDUFB6O95139 128 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 FGFBP3Q8TAT2 258 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 CITED2Q99967 270 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 PGPEP1Q9NXJ5 209 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 TRAV8-7A0A075B6U6 113 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 GGTLC3B5MD39 225 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 PAX4O43316 350 aa7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 RPS11P62280 158 aaKnown RBP eCLIP7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 ZFC3H1O60293 1989 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-202ENST00000381753 USF3Q68DE3 2245 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 DMKNQ6E0U4 476 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 TMEM86BQ8N661 226 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 ZNF253O75346 499 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 IGHV4-31P0DP07 118 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 INSL4Q14641 139 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 C11orf45Q8TAV5 145 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 TM2D2Q9BX73 214 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 PQLC2LA1A4F0 135 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 ZNF98A6NK75 572 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 UPK2O00526 184 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 IGLL1P15814 213 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 MTFP1Q9UDX5 166 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 SS18Q15532 418 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 GPHA2Q96T91 129 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 MRPL32Q9BYC8 188 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 TMEM14BQ9NUH8 114 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 TECTAO75443 2155 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 TGIF2-C20orf24A0A0A6YYL0 155 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 A6NDN8 102 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 CDS2O95674 445 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 ZFP30Q9Y2G7 519 aa7.51□□□□□ -1.21
LIMCH1-202ENST00000381753 SIP14410 1827 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 FOCADQ5VW36 1801 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 APCSP02743 223 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 RPLP1P05386 114 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 GZMBP10144 247 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 SLAQ13239 276 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 IGFL2Q6UWQ7 119 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 PLPPR1Q8TBJ4 325 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 Q96M66 194 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 TBX15Q96SF7 602 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 TRBV20OR9-2A0A075B6H5 130 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 HLA-DQA1P01909 254 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 FAM90A2PQ658T7 463 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 PQLC2Q6ZP29 291 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 TNFSF18Q9UNG2 199 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 ALPK2Q86TB3 2170 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 TTC28Q96AY4 2481 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 PLXNA3P51805 1871 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 IGKV1D-43A0A0B4J1Z2 117 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 A8MWL6 223 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 RUNX1Q01196 453 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 IFITM10A6NMD0 228 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 RBFOX2O43251 390 aaKnown RBP eCLIP7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 ATP5LO75964 103 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 DNAL4O96015 105 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 RPL15P61313 204 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 CLEC18BQ6UXF7 455 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 LINC00299Q6ZSB3 139 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 MAP1LC3AQ9H492 121 aa7.5□□□□□ -1.21
LIMCH1-202ENST00000381753 A0A1B0GW64 132 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 H7C2G1 150 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 PRB2P02812 416 aaPredicted RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 B3GALT5-AS1P59052 145 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 TMEM95Q3KNT9 176 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 MRPL54Q6P161 138 aaKnown RBP7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 UQCC3Q6UW78 93 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 CST9LQ9H4G1 147 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 G3V318 75 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 PAGE4O60829 102 aa7.49□□□□□ -1.21
LIMCH1-202ENST00000381753 GHRHP01286 108 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms