RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 TMEM170BQ5T4T1 132 aa13.17□□□□□ -0.3
USP42-201ENST00000306177 TREML4Q6UXN2 200 aa13.17□□□□□ -0.3
USP42-201ENST00000306177 OR10W1Q8NGF6 305 aa13.16□□□□□ -0.3
USP42-201ENST00000306177 TRBV6-6A0A0A6YYG2 114 aa13.16□□□□□ -0.3
USP42-201ENST00000306177 ARL6IP6Q8N6S5 226 aa13.16□□□□□ -0.3
USP42-201ENST00000306177 SCGB3A1Q96QR1 104 aa13.16□□□□□ -0.3
USP42-201ENST00000306177 EFNA4P52798 201 aa13.16□□□□□ -0.3
USP42-201ENST00000306177 GCSAMLQ5JQS6 135 aa13.16□□□□□ -0.3
USP42-201ENST00000306177 TMEM101Q96IK0 257 aa13.16□□□□□ -0.3
USP42-201ENST00000306177 QRFPP83859 136 aa13.16□□□□□ -0.3
USP42-201ENST00000306177 A0A0G2JNJ9 132 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 TMEM262E9PQX1 116 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 C8orf46Q8TAG6 207 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 LINC01587Q99440 93 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 VSIRQ9H7M9 311 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 Q9UFV3 132 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 TRAV40A0A0B4J280 105 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 PSMB11A5LHX3 300 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 WNT2P09544 360 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 TRAV8-6A0A0B4J262 113 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 PLP1P60201 277 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 PKDREJQ9NTG1 2253 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 NMSQ5H8A3 153 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 Q6ZS92 163 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 PSG8Q9UQ74 426 aa13.15□□□□□ -0.3
USP42-201ENST00000306177 MLNRO43193 412 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 HOXA5P20719 270 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 FAM71F2Q6NXP2 309 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 TMEM170AQ8WVE7 144 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 DSCR9P59020 149 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 METRNQ9UJH8 293 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 GBF1Q92538 1859 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 A0A1W2PRX2 142 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 LILRA1O75019 489 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 MRPS16Q9Y3D3 137 aaKnown RBP13.14□□□□□ -0.31
USP42-201ENST00000306177 CACNA1BQ00975 2339 aa13.14□□□□□ -0.31
USP42-201ENST00000306177 Q6P435 159 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 RNF144BQ7Z419 303 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 FOXC2Q99958 501 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 ALKBH7Q9BT30 221 aaPredicted RBP13.13□□□□□ -0.31
USP42-201ENST00000306177 GGTLC1Q9BX51 225 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 LEPP41159 167 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 FHL1Q13642 323 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 OCC1Q8TAD7 63 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 TMEM167AQ8TBQ9 72 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 RNF5Q99942 180 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 CYTL1Q9NRR1 136 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 TICRRQ7Z2Z1 1910 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 IGKV1-5P01602 117 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 PLAURQ03405 335 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 C10orf55Q5SWW7 151 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 IGHV1-3A0A0C4DH29 117 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 PSMG4Q5JS54 123 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 LDLRAD2Q5SZI1 272 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 VMO1Q7Z5L0 202 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 C2orf88Q9BSF0 95 aa13.13□□□□□ -0.31
USP42-201ENST00000306177 TP53BP1Q12888 1972 aaPredicted RBP13.13□□□□□ -0.31
USP42-201ENST00000306177 LY6G6EA0A0G2JKS1 128 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 OOSP1A8MZH6 123 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 TCF23Q7RTU1 214 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 FAM19A2Q8N3H0 131 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 U3KQA8 63 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 DUSP14O95147 198 aaKnown RBP13.12□□□□□ -0.31
USP42-201ENST00000306177 STAG3L3P0CL85 134 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 CTAG1AP78358 180 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 PAX8Q06710 450 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 SLC25A48Q6ZT89 311 aaKnown RBP13.12□□□□□ -0.31
USP42-201ENST00000306177 MBNL3Q9NUK0 354 aaKnown RBP13.12□□□□□ -0.31
USP42-201ENST00000306177 TPTE2P1Q5T6R2 138 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 TRAV21A0A0B4J279 112 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 SERF1AO75920 110 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 SMIM13P0DJ93 91 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 MINOS1Q5TGZ0 78 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 GAFA1Q96PS6 74 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 MINOS1-NBL1R4GNA1 71 aa13.12□□□□□ -0.31
USP42-201ENST00000306177 TRAV41A0A0B4J266 112 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 Q6ZS49 121 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 FAM169BQ8N8A8 192 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 JMJD8Q96S16 334 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 CD5P06127 495 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 CD7P09564 240 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 ADMP35318 185 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 TEX38Q6PEX7 206 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 PGPEP1LA6NFU8 196 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.11□□□□□ -0.31
USP42-201ENST00000306177 TMEM50AO95807 157 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 PCP4P48539 62 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 C20orf204Q6ZNR8 217 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 TTC9CQ8N5M4 171 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 LINC00469Q8N7U9 141 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 GLMPQ8WWB7 406 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 PARD6GQ9BYG4 376 aaPredicted RBP13.11□□□□□ -0.31
USP42-201ENST00000306177 EP400Q96L91 3159 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 TRAV1-1A0A0B4J248 108 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 TMEM14EPQ6UXP3 125 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 TMEM190Q8WZ59 177 aa13.11□□□□□ -0.31
USP42-201ENST00000306177 SSBP4Q9BWG4 385 aaPredicted RBP13.11□□□□□ -0.31
USP42-201ENST00000306177 PHF3Q92576 2039 aaKnown RBP13.11□□□□□ -0.31
USP42-201ENST00000306177 COQ2Q96H96 371 aa13.1□□□□□ -0.31
USP42-201ENST00000306177 C14orf144Q96I85 54 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms