RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 NKAPP1Q8N9T2 125 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 SBF2Q86WG5 1849 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 RNF125Q96EQ8 232 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 C1QL2Q7Z5L3 287 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 AMELYQ99218 206 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 LINC00527Q9UJ94 153 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 ADMP35318 185 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 CACNG8Q8WXS5 425 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 OVOL2Q9BRP0 275 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 PPP1R32Q7Z5V6 425 aa9.54□□□□□ -0.88
PTPN4-201ENST00000263708 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.54□□□□□ -0.88
PTPN4-201ENST00000263708 WNT2P09544 360 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 DLX4Q92988 240 aaPredicted RBP9.53□□□□□ -0.88
PTPN4-201ENST00000263708 NGFRP08138 427 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 ABHD17AQ96GS6 310 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 NOTCH3Q9UM47 2321 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 A8MXK9 166 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 C1orf159Q96HA4 380 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 NMBP08949 121 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 SSBP2P81877 361 aaPredicted RBP9.53□□□□□ -0.88
PTPN4-201ENST00000263708 UBE2E2Q96LR5 201 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 CFHR5Q9BXR6 569 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 SAA2-SAA4A0A096LPE2 208 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 TRAV25A0A0B4J276 109 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 SAA2P0DJI9 122 aaPredicted RBP9.53□□□□□ -0.88
PTPN4-201ENST00000263708 ZNF479Q96JC4 524 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 TSC2P49815 1807 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 SLC25A45Q8N413 288 aa9.53□□□□□ -0.88
PTPN4-201ENST00000263708 IGKV2-40A0A087WW87 121 aaPredicted RBP9.52□□□□□ -0.88
PTPN4-201ENST00000263708 IGHV2OR16-5A0A0B4J2B6 119 aa9.52□□□□□ -0.88
PTPN4-201ENST00000263708 IGKV2D-40P01614 121 aaPredicted RBP9.52□□□□□ -0.88
PTPN4-201ENST00000263708 RPL36AP83881 106 aaKnown RBP9.52□□□□□ -0.88
PTPN4-201ENST00000263708 RPL36ALQ969Q0 106 aaKnown RBP9.52□□□□□ -0.88
PTPN4-201ENST00000263708 NRN1Q9NPD7 142 aa9.52□□□□□ -0.88
PTPN4-201ENST00000263708 COL6A6A6NMZ7 2263 aa9.52□□□□□ -0.88
PTPN4-201ENST00000263708 hADV29S1A0JD25 119 aa9.52□□□□□ -0.88
PTPN4-201ENST00000263708 ZNF561-AS1K7EIQ3 104 aa9.52□□□□□ -0.88
PTPN4-201ENST00000263708 SERF1AO75920 110 aa9.52□□□□□ -0.88
PTPN4-201ENST00000263708 TCRAP04437 139 aa9.52□□□□□ -0.88
PTPN4-201ENST00000263708 ARID2Q68CP9 1835 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 SHANK3Q9BYB0 1731 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 RASL10AQ92737 203 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 LY6DQ14210 128 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 TRPM7Q96QT4 1865 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 SLC25A38Q96DW6 304 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 A0A1W2PQF6 199 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 LSM4Q9Y4Z0 139 aaKnown RBP9.52□□□□□ -0.89
PTPN4-201ENST00000263708 TRBV5-5A0A0J9YX44 114 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 TRAV13-1A0A0B4J241 112 aa9.52□□□□□ -0.89
PTPN4-201ENST00000263708 CMC4P56277 68 aaPredicted RBP9.52□□□□□ -0.89
PTPN4-201ENST00000263708 F2Z2F3 143 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 CELA3BP08861 270 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 RPL15P61313 204 aaKnown RBP9.51□□□□□ -0.89
PTPN4-201ENST00000263708 LINC00312Q9Y6C7 94 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 CACNA1BQ00975 2339 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 NCKAP5O14513 1909 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 PTPRDP23468 1912 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 HLA-DQB1P01920 261 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 KLHL30-AS1Q8NEE0 82 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.51□□□□□ -0.89
PTPN4-201ENST00000263708 NPIPB13A6NJU9 1138 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 NPIPB5A8MRT5 1133 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 THBDP07204 575 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 ZNF876PQ49A33 203 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 DEFB130BP0DP73 79 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 DEFB130AP0DP74 79 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 COX5BP10606 129 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 PARP14Q460N5 1801 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 PTPRFP10586 1907 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 C12orf77C9JDV5 145 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 H2BFSP57053 126 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 NR2C2APQ86WQ0 139 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 PVRIGQ6DKI7 326 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 BRWD3Q6RI45 1802 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 CCL3L1P16619 93 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 SAP25Q8TEE9 199 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 PRDM13Q9H4Q3 707 aa9.51□□□□□ -0.89
PTPN4-201ENST00000263708 RIPPLY2Q5TAB7 128 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 POC1AQ8NBT0 407 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 LAMTOR2Q9Y2Q5 125 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 CELA3AP09093 270 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 GSN-AS1Q9NRJ2 163 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 ZXDCQ2QGD7 858 aaPredicted RBP9.5□□□□□ -0.89
PTPN4-201ENST00000263708 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.5□□□□□ -0.89
PTPN4-201ENST00000263708 IRF3Q14653 427 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 OVOL1O14753 267 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 IGLV1-36A0A0B4J1U3 117 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 WNK3Q9BYP7 1800 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 PYYP10082 97 aa9.5□□□□□ -0.89
PTPN4-201ENST00000263708 C22orf46C9J442 243 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 LCNL1Q6ZST4 164 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 RNASE6Q93091 150 aaKnown RBP9.49□□□□□ -0.89
PTPN4-201ENST00000263708 LYNX1G3V0Z9 82 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 LYNX1P0DP58 116 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 TCTEX1D4Q5JR98 221 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 SRRM4A7MD48 611 aaKnown RBP9.49□□□□□ -0.89
PTPN4-201ENST00000263708 C17orf100A8MU93 164 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 RAMP3O60896 148 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 SEC11AP67812 179 aa9.49□□□□□ -0.89
PTPN4-201ENST00000263708 CFHR3Q02985 330 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms