RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 LHFPL4Q7Z7J7 247 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 RNASE6Q93091 150 aaKnown RBP9.56□□□□□ -0.88
NPHP4-204ENST00000460696 Q9UFV3 132 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 PLXNB1O43157 2135 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 ATP5J2P56134 94 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 MEF2CQ06413 473 aaPredicted RBP9.56□□□□□ -0.88
NPHP4-204ENST00000460696 LINC00305Q7Z4B0 112 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 C1QL4Q86Z23 238 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 ARL2-SNX15V9GYD0 113 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 TRBV24-1A0A075B6N3 115 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 TMSB15BA0A087X1C1 80 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 DPRXA6NFQ7 191 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 ZNF785A8K8V0 405 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 G0S2P27469 103 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 CLEC7AQ9BXN2 247 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 RNASE7Q9H1E1 156 aaKnown RBP9.56□□□□□ -0.88
NPHP4-204ENST00000460696 DMRT1Q9Y5R6 373 aa9.56□□□□□ -0.88
NPHP4-204ENST00000460696 CHD6Q8TD26 2715 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 IGHV3-35A0A0C4DH35 117 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 TEX50A0A1B0GTY4 177 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 B9A039 149 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 FOXH1O75593 365 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 APCSP02743 223 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 STAG3L2P0CL84 134 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 STAG3L3P0CL85 134 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 HIST1H1EP10412 219 aaKnown RBP9.55□□□□□ -0.88
NPHP4-204ENST00000460696 CD24P25063 80 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 LGALS7P47929 136 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 PRCDQ00LT1 54 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 TMEM30BQ3MIR4 351 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 HIGD1AQ9Y241 93 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 PRNTQ86SH4 94 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 LINC01551Q86U37 167 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 OR52E5Q8NH55 327 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 GAFA1Q96PS6 74 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 PYYP10082 97 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 DDTP30046 118 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 NEUROG1Q92886 237 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 AP1S3Q96PC3 154 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 THYN1Q9P016 225 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 FAM215AQ9Y5M1 114 aa9.55□□□□□ -0.88
NPHP4-204ENST00000460696 FRYLO94915 3013 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 TRAV5A0A0B4J249 113 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 PRB4P10163 310 aaPredicted RBP9.54□□□□□ -0.88
NPHP4-204ENST00000460696 HTR1DP28221 377 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 LCN2P80188 198 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 TMEM183BQ1AE95 376 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 SPRNQ5BIV9 151 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 PYY3Q5JQD4 70 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 ZNF788Q6ZQV5 615 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 SSX8Q7RTT4 187 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 C15orf65H3BRN8 121 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 MMP23AO75900 390 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 IGLV1-44P01699 117 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 SRIP30626 198 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 S100A7P31151 101 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 GPR6P46095 362 aaPredicted RBP9.54□□□□□ -0.88
NPHP4-204ENST00000460696 CD69Q07108 199 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 ADIPOQQ15848 244 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 TMEM200BQ69YZ2 307 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 TMEM242Q9NWH2 141 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 REV3LO60673 3130 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 BRS3P32247 399 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 CDKN1AP38936 164 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 PPOXP50336 477 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 HIST3H2BBQ8N257 126 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 AGMATQ9BSE5 352 aa9.54□□□□□ -0.88
NPHP4-204ENST00000460696 M0R2Z0 102 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 F2RL2O00254 374 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 LYPD2Q6UXB3 125 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 HIST1H2BLQ99880 126 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 DKK4Q9UBT3 224 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 LAMA1P25391 3075 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 LEMD1Q68G75 181 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 Q71RC1 249 aaPredicted RBP9.53□□□□□ -0.88
NPHP4-204ENST00000460696 C19orf24Q9BVV8 132 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 IL36BQ9NZH7 164 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 FN1P02751 2386 aaKnown RBP9.53□□□□□ -0.88
NPHP4-204ENST00000460696 DLX1P56177 255 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 ECSCRQ19T08 205 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 COX19Q49B96 90 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 NAGKQ9UJ70 344 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 ATG2AQ2TAZ0 1938 aa9.53□□□□□ -0.88
NPHP4-204ENST00000460696 FAM90A9PA6NNJ1 464 aa9.52□□□□□ -0.88
NPHP4-204ENST00000460696 GCGP01275 180 aa9.52□□□□□ -0.88
NPHP4-204ENST00000460696 CLEC3BP05452 202 aa9.52□□□□□ -0.88
NPHP4-204ENST00000460696 NBEAP1P0C6P0 100 aa9.52□□□□□ -0.88
NPHP4-204ENST00000460696 TEX38Q6PEX7 206 aa9.52□□□□□ -0.88
NPHP4-204ENST00000460696 RBM14Q96PK6 669 aaKnown RBP9.52□□□□□ -0.88
NPHP4-204ENST00000460696 NDFIP1Q9BT67 221 aa9.52□□□□□ -0.88
NPHP4-204ENST00000460696 FOXA2Q9Y261 457 aaPredicted RBP9.52□□□□□ -0.88
NPHP4-204ENST00000460696 TEP1Q99973 2627 aaKnown RBP9.52□□□□□ -0.89
NPHP4-204ENST00000460696 SETXQ7Z333 2677 aaKnown RBP9.52□□□□□ -0.89
NPHP4-204ENST00000460696 CA1P00915 261 aaPredicted RBP9.52□□□□□ -0.89
NPHP4-204ENST00000460696 FCGR2BP31994 310 aaPredicted RBP9.52□□□□□ -0.89
NPHP4-204ENST00000460696 ATP5IP56385 69 aaPredicted RBP9.52□□□□□ -0.89
NPHP4-204ENST00000460696 CACNG8Q8WXS5 425 aa9.52□□□□□ -0.89
NPHP4-204ENST00000460696 EAF1Q96JC9 268 aaPredicted RBP9.52□□□□□ -0.89
NPHP4-204ENST00000460696 TMEM178BH3BS89 294 aa9.52□□□□□ -0.89
NPHP4-204ENST00000460696 LIPFP07098 398 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms