RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PDLIM4P50479 330 aa16.76■□□□□ 0.27
CCDC88B-203ENST00000359902 PRB3Q04118 309 aaPredicted RBP16.76■□□□□ 0.27
CCDC88B-203ENST00000359902 TRAV5A0A0B4J249 113 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 HELTA6NFD8 242 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 GGTLC3B5MD39 225 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 CCL21O00585 134 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 REG1AP05451 166 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 PRRX1P54821 245 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 TEX45Q8NA69 505 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 MRPL36Q9P0J6 103 aaKnown RBP16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 IGKV1D-37A0A075B6S9 117 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 RNF2Q99496 336 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 SLC25A2Q9BXI2 301 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 NAV3Q8IVL0 2385 aa16.75■□□□□ 0.27
CCDC88B-203ENST00000359902 FSTL3O95633 263 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 AMBPP02760 352 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 ZNF90Q03938 601 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 ZNF672Q499Z4 452 aaPredicted RBP16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 THAP8Q8NA92 274 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 TRAPPC1Q9Y5R8 145 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 A0A1W2PRE2 83 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 TCRBV4S1A1TA0A5B7 111 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 IGLC7A0M8Q6 106 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 SLC17A3O00476 420 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 CNTFRP26992 372 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 SUMO1P63165 101 aaKnown RBP16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 RAXQ9Y2V3 346 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 MALRD1Q5VYJ5 2156 aa16.74■□□□□ 0.27
CCDC88B-203ENST00000359902 PLXNB1O43157 2135 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 BUB1B-PAK6H3BSN5 160 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 CRYGBP07316 175 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 GNG4P50150 75 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 CENPWQ5EE01 88 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 PATE2Q6UY27 113 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 COL25A1Q9BXS0 654 aaPredicted RBP16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 IL36BQ9NZH7 164 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 CDSNQ15517 529 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 CLEC7AQ9BXN2 247 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 INSIG2Q9Y5U4 225 aa16.73■□□□□ 0.27
CCDC88B-203ENST00000359902 IGHV1-3A0A0C4DH29 117 aa16.72■□□□□ 0.27
CCDC88B-203ENST00000359902 HIST1H1BP16401 226 aaKnown RBP16.72■□□□□ 0.27
CCDC88B-203ENST00000359902 OR5I1Q13606 314 aa16.72■□□□□ 0.27
CCDC88B-203ENST00000359902 PVRIGQ6DKI7 326 aa16.72■□□□□ 0.27
CCDC88B-203ENST00000359902 MMD2Q8IY49 270 aa16.72■□□□□ 0.27
CCDC88B-203ENST00000359902 PPIAL4CA0A0B4J2A2 164 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 COX7A2P2O60397 106 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 PPIAL4GP0DN37 164 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 CNN1P51911 297 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 DNLZQ5SXM8 178 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 HCP5Q6MZN7 132 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 BEND2Q8NDZ0 799 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 UCNP55089 124 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 C10orf113Q5VZT2 155 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 RUSC1-AS1Q66K80 236 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 ST6GALNAC3Q8NDV1 305 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 OR5AU1Q8NGC0 362 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 OR1L4Q8NGR5 311 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 ZNF355PQ9NSJ1 428 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 SIGLEC9Q9Y336 463 aa16.71■□□□□ 0.27
CCDC88B-203ENST00000359902 CRYGCP07315 174 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 RPL27AP46776 148 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 MFAP2P55001 183 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 ERVFC1-1P60608 527 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 SELENOTP62341 195 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 UBE2L3P68036 154 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 TNXAQ16473 311 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 PRDM13Q9H4Q3 707 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 V9GYV3 84 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 TRAV9-1A0A075B6T8 112 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 RBP4P02753 201 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 YPEL3P61236 119 aaPredicted RBP16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 KLRB1Q12918 225 aa16.7■□□□□ 0.26
CCDC88B-203ENST00000359902 COX7A1P24310 79 aa16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 ADORA2A-AS1P86434 159 aa16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 C8orf46Q8TAG6 207 aa16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 C22orf46C9J442 243 aa16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 COMPP49747 757 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 ETFRF1Q6IPR1 90 aa16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 MRPL41Q8IXM3 137 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 MISP3Q96FF7 219 aa16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 SPTA1P02549 2419 aa16.69■□□□□ 0.26
CCDC88B-203ENST00000359902 PYYP10082 97 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 C19orf35Q6ZS72 473 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 ANKHD1Q8IWZ3 2542 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 IGLV2-8P01709 118 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 APELAP0DMC3 54 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 LGALS4P56470 323 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 BPIFB3P59826 476 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 TIGITQ495A1 244 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 PAXXQ9BUH6 204 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 TNFRSF19Q9NS68 423 aa16.68■□□□□ 0.26
CCDC88B-203ENST00000359902 JOSD1Q15040 202 aaPredicted RBP16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 RPEL1Q2QD12 228 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 PPP1R27Q86WC6 154 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 OR8B3Q8NGG8 313 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 C14orf144Q96I85 54 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 IGF2BP2-AS1Q96M15 143 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 OR8B2Q96RD0 313 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 LY6LH3BQJ8 138 aa16.67■□□□□ 0.26
CCDC88B-203ENST00000359902 LY6HO94772 140 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms