RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 MYL6P60660 151 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST1H2BCP62807 126 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 KISS1Q15726 138 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST3H3Q16695 136 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST2H2BEQ16778 126 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 IMPG1Q17R60 797 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.74□□□□□ -2.29
VPS50-219ENST00000495039 LCN15Q6UWW0 184 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 OR8J2Q8NGG1 315 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST1H2BHQ93079 126 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 ITFG2Q969R8 447 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 CHMP6Q96FZ7 201 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 SCGB3A1Q96QR1 104 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST1H2BNQ99877 126 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST1H2BMQ99879 126 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 DERL1Q9BUN8 251 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 OR51V1Q9H2C8 321 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 UCK1Q9HA47 277 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 TECTAO75443 2155 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 POLEQ07864 2286 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 SOGA1O94964 1423 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 MTUS2Q5JR59 1369 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.73□□□□□ -2.29
VPS50-219ENST00000495039 TMEM210A6NLX4 147 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 EEF1E1-BLOC1S5C9J1V9 151 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 IFNA16P05015 189 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 SERPINA6P08185 405 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 RPS17P08708 135 aaKnown RBP0.73□□□□□ -2.29
VPS50-219ENST00000495039 OR5G3P0C626 314 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 HIST1H1EP10412 219 aaKnown RBP0.73□□□□□ -2.29
VPS50-219ENST00000495039 CD79AP11912 226 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 BASP1P80723 227 aaKnown RBP0.73□□□□□ -2.29
VPS50-219ENST00000495039 REEP5Q00765 189 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 FADDQ13158 208 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 PMAIP1Q13794 54 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 TMED2Q15363 201 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 SPANXN3Q5MJ09 141 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 C8orf74Q6P047 294 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 RPL22L1Q6P5R6 122 aaKnown RBP0.73□□□□□ -2.29
VPS50-219ENST00000495039 ZNF826PQ6ZT77 177 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 OR4D11Q8NGI4 311 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 OR2T4Q8NH00 348 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 KLK6Q92876 244 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 DCUN1D1Q96GG9 259 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 C8orf76Q96K31 380 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 OR52E6Q96RD3 313 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 MRPL57Q9BQC6 102 aaKnown RBP0.73□□□□□ -2.29
VPS50-219ENST00000495039 GINS4Q9BRT9 223 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 ULBP3Q9BZM4 244 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 PSTPIP2Q9H939 334 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 VPS29Q9UBQ0 182 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 SCRIBQ14160 1630 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 TOPBP1Q92547 1522 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 CECR2Q9BXF3 1484 aa0.73□□□□□ -2.29
VPS50-219ENST00000495039 PTPRGP23470 1445 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 WRNQ14191 1432 aaPredicted RBP eCLIP0.72□□□□□ -2.29
VPS50-219ENST00000495039 EEA1Q15075 1411 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 CEP162Q5TB80 1403 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 NUP155O75694 1391 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 CCNB3Q8WWL7 1395 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 COL4A5P29400 1685 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 TMEM114B3SHH9 223 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 PSMD12O00232 456 aaPredicted RBP0.72□□□□□ -2.29
VPS50-219ENST00000495039 LYPLA2O95372 231 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 IGKV1-5P01602 117 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 HTR1AP08908 422 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 FKBP2P26885 142 aaKnown RBP0.72□□□□□ -2.29
VPS50-219ENST00000495039 BRS3P32247 399 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 AP3S2P59780 193 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 SPCS3P61009 180 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 PSME3P61289 254 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 AESQ08117 197 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 LRRC25Q8N386 305 aaPredicted RBP0.72□□□□□ -2.29
VPS50-219ENST00000495039 FAM19A2Q8N3H0 131 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 ANP32BQ92688 251 aaKnown RBP0.72□□□□□ -2.29
VPS50-219ENST00000495039 SLC35B4Q969S0 331 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 BTF3L4Q96K17 158 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 CMSS1Q9BQ75 279 aaKnown RBP0.72□□□□□ -2.29
VPS50-219ENST00000495039 SLC50A1Q9BRV3 221 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 COMMD5Q9GZQ3 224 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.72□□□□□ -2.29
VPS50-219ENST00000495039 SLC22A13Q9Y226 551 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 ARL2BPQ9Y2Y0 163 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 PLB1Q6P1J6 1458 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 CLIP1P30622 1438 aa0.72□□□□□ -2.29
VPS50-219ENST00000495039 MED12LQ86YW9 2145 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 ANKRD30AQ9BXX3 1397 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 CACNA1BQ00975 2339 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 IGKV1D-42A0A075B6H8 117 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 A0A087WX48 190 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 CLDN24A6NM45 220 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 FADS1O60427 444 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 HBA1P69905 142 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 SRSF6Q13247 344 aaKnown RBP0.71□□□□□ -2.3
VPS50-219ENST00000495039 OR2F1Q13607 317 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 EDDM3AQ14507 147 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 ALKAL1Q6UXT8 129 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 DEFB128Q7Z7B8 93 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 BPIFA4PQ86YQ2 179 aa0.71□□□□□ -2.3
VPS50-219ENST00000495039 C20orf196Q8IYI0 205 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms