RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 OR9G1Q8NH87 305 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 MBD3L2Q8NHZ7 208 aaPredicted RBP16.83■□□□□ 0.28
CLK3-202ENST00000395066 NEUROG1Q92886 237 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 ZNF503Q96F45 646 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 RNASE7Q9H1E1 156 aaKnown RBP16.83■□□□□ 0.28
CLK3-202ENST00000395066 PLEKHA3Q9HB20 300 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 NAT8BQ9UHF3 227 aa16.83■□□□□ 0.28
CLK3-202ENST00000395066 IGHV1-46P01743 117 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 RAB31Q13636 194 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 CENPWQ5EE01 88 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 RNF7Q9UBF6 113 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 PKDREJQ9NTG1 2253 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 PCNX1Q96RV3 2341 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 BSNQ9UPA5 3926 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 NAV3Q8IVL0 2385 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 DIRC3C9JPN6 131 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 OR7C2O60412 319 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 LINC00614P0C842 121 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 GNG4P50150 75 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 RELQ04864 619 aaPredicted RBP16.82■□□□□ 0.28
CLK3-202ENST00000395066 STUMQ69YW2 141 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 PQLC2Q6ZP29 291 aa16.82■□□□□ 0.28
CLK3-202ENST00000395066 TBL2Q9Y4P3 447 aaKnown RBP16.82■□□□□ 0.28
CLK3-202ENST00000395066 DYSFO75923 2080 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 REG1BP48304 166 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 TCL1AP56279 114 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 TIMM23BQ5SRD1 257 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 Q8N976 141 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 RNF2Q99496 336 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 HELTA6NFD8 242 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 IGHV3-48P01763 117 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 MT-ND6P03923 174 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 SFTPCP11686 197 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 CCL8P80075 99 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 RPL19P84098 196 aaKnown RBP16.81■□□□□ 0.28
CLK3-202ENST00000395066 SLC35D1Q9NTN3 355 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 SLC45A2Q9UMX9 530 aa16.81■□□□□ 0.28
CLK3-202ENST00000395066 CX3CL1P78423 397 aa16.8■□□□□ 0.28
CLK3-202ENST00000395066 MORN5Q5VZ52 161 aa16.8■□□□□ 0.28
CLK3-202ENST00000395066 WDR73Q6P4I2 378 aa16.8■□□□□ 0.28
CLK3-202ENST00000395066 PLXNB1O43157 2135 aa16.8■□□□□ 0.28
CLK3-202ENST00000395066 TEX50A0A1B0GTY4 177 aa16.8■□□□□ 0.28
CLK3-202ENST00000395066 NHLRC2Q8NBF2 726 aa16.8■□□□□ 0.28
CLK3-202ENST00000395066 NRN1Q9NPD7 142 aa16.8■□□□□ 0.28
CLK3-202ENST00000395066 IGLV3-9A0A075B6K5 115 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 SAA1P0DJI8 122 aaPredicted RBP16.79■□□□□ 0.28
CLK3-202ENST00000395066 AMTP48728 403 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 KIAA1644Q3SXP7 199 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 OR10J3Q5JRS4 329 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 COL5A1-AS1Q5SY13 56 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 TRAV5A0A0B4J249 113 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 GGTLC3B5MD39 225 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 E7EUB6 86 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 K7EM74 188 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 UPK2O00526 184 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 TMEM136Q6ZRR5 245 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 C1orf174Q8IYL3 243 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 FAM222BQ8WU58 562 aa16.79■□□□□ 0.28
CLK3-202ENST00000395066 TFPI2P48307 235 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 SSBP2P81877 361 aaPredicted RBP16.78■□□□□ 0.28
CLK3-202ENST00000395066 PRCDQ00LT1 54 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 FAM169BQ8N8A8 192 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 KCNS1Q96KK3 526 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 IL19Q9UHD0 177 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 ARL2-SNX15V9GYD0 113 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 CCL3L1P16619 93 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 CTRLP40313 264 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 SUMO1P63165 101 aaKnown RBP16.78■□□□□ 0.28
CLK3-202ENST00000395066 SPATA45Q537H7 98 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 PIP4P1Q86T03 277 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 OR2T6Q8NHC8 308 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 RCHY1Q96PM5 261 aa16.78■□□□□ 0.28
CLK3-202ENST00000395066 SLC25A10Q9UBX3 287 aaPredicted RBP16.78■□□□□ 0.28
CLK3-202ENST00000395066 PMCHP20382 165 aa16.77■□□□□ 0.28
CLK3-202ENST00000395066 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.77■□□□□ 0.28
CLK3-202ENST00000395066 TMEM167BQ9NRX6 74 aa16.77■□□□□ 0.28
CLK3-202ENST00000395066 PRNDQ9UKY0 176 aa16.77■□□□□ 0.28
CLK3-202ENST00000395066 A0A1W2PS18 150 aa16.77■□□□□ 0.27
CLK3-202ENST00000395066 CHRNB4P30926 498 aa16.77■□□□□ 0.27
CLK3-202ENST00000395066 ZADH2Q8N4Q0 377 aa16.77■□□□□ 0.27
CLK3-202ENST00000395066 MRPL20Q9BYC9 149 aaKnown RBP16.77■□□□□ 0.27
CLK3-202ENST00000395066 OSTCQ9NRP0 149 aa16.77■□□□□ 0.27
CLK3-202ENST00000395066 PIEZO2Q9H5I5 2752 aa16.77■□□□□ 0.27
CLK3-202ENST00000395066 ITGB1BP1O14713 200 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 ZNF253O75346 499 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 CA1P00915 261 aaPredicted RBP16.76■□□□□ 0.27
CLK3-202ENST00000395066 DIAPH2-AS1Q14236 149 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 TIGITQ495A1 244 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 COX19Q49B96 90 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 ZNF788Q6ZQV5 615 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 SLC25A48Q6ZT89 311 aaKnown RBP16.76■□□□□ 0.27
CLK3-202ENST00000395066 LINC00479Q96M42 142 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 RPUSD1Q9UJJ7 312 aaKnown RBP16.76■□□□□ 0.27
CLK3-202ENST00000395066 OR5G3P0C626 314 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 CORO2AQ92828 525 aa16.76■□□□□ 0.27
CLK3-202ENST00000395066 MGST1P10620 155 aaKnown RBP16.75■□□□□ 0.27
CLK3-202ENST00000395066 GATA4P43694 442 aa16.75■□□□□ 0.27
CLK3-202ENST00000395066 MMDQ15546 238 aa16.75■□□□□ 0.27
CLK3-202ENST00000395066 RTL8BQ17RB0 113 aa16.75■□□□□ 0.27
CLK3-202ENST00000395066 C10orf55Q5SWW7 151 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms