RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 ZNF788Q6ZQV5 615 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 ZADH2Q8N4Q0 377 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 VN1R17PQ8TDU5 208 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 FAM103A1Q9BTL3 118 aaKnown RBP17.9■□□□□ 0.46
SHMT1-201ENST00000316694 RNASE2P10153 161 aaKnown RBP17.9■□□□□ 0.46
SHMT1-201ENST00000316694 C22orf34Q6ZV56 151 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 GNB4Q9HAV0 340 aa17.9■□□□□ 0.46
SHMT1-201ENST00000316694 TRBV9A0A0B4J1U6 114 aa17.89■□□□□ 0.45
SHMT1-201ENST00000316694 OR5G3P0C626 314 aa17.89■□□□□ 0.45
SHMT1-201ENST00000316694 CX3CL1P78423 397 aa17.89■□□□□ 0.45
SHMT1-201ENST00000316694 SERTAD4Q9NUC0 356 aa17.89■□□□□ 0.45
SHMT1-201ENST00000316694 IRF2P14316 349 aa17.89■□□□□ 0.45
SHMT1-201ENST00000316694 Q0VG73 95 aa17.89■□□□□ 0.45
SHMT1-201ENST00000316694 PAM16Q9Y3D7 125 aa17.89■□□□□ 0.45
SHMT1-201ENST00000316694 TRAV5A0A0B4J249 113 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 TNFSF4P23510 183 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 NHLRC2Q8NBF2 726 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 OR5B3Q8NH48 314 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 OR2T6Q8NHC8 308 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 HARBI1Q96MB7 349 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 MRPL20Q9BYC9 149 aaKnown RBP17.88■□□□□ 0.45
SHMT1-201ENST00000316694 BET1LQ9NYM9 111 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 TM4SF5O14894 197 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 C8orf88P0DMB2 117 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 CHRNB4P30926 498 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 RPL19P84098 196 aaKnown RBP17.88■□□□□ 0.45
SHMT1-201ENST00000316694 CD69Q07108 199 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 FAM27E3Q08E93 113 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 MORN5Q5VZ52 161 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 OR1L8Q8NGR8 309 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 SLC25A33Q9BSK2 321 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 COMMD5Q9GZQ3 224 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 OSTCQ9NRP0 149 aa17.88■□□□□ 0.45
SHMT1-201ENST00000316694 ROS1P08922 2347 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 hADV38S2A0JD32 116 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 REG1BP48304 166 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 CCL8P80075 99 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 IBA57Q5T440 356 aaKnown RBP17.87■□□□□ 0.45
SHMT1-201ENST00000316694 MRPL54Q6P161 138 aaKnown RBP17.87■□□□□ 0.45
SHMT1-201ENST00000316694 SIGLECL1Q8N7X8 197 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 NEU1Q99519 415 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 LINC00574Q9H8X3 128 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 RAB4AP20338 218 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 ASPHD1Q5U4P2 390 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 WDR73Q6P4I2 378 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 TEX43Q6ZNM6 134 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 C19orf24Q9BVV8 132 aa17.87■□□□□ 0.45
SHMT1-201ENST00000316694 UBE2L3P68036 154 aaKnown RBP17.86■□□□□ 0.45
SHMT1-201ENST00000316694 TMEM136Q6ZRR5 245 aa17.86■□□□□ 0.45
SHMT1-201ENST00000316694 AKAP13Q12802 2813 aa17.86■□□□□ 0.45
SHMT1-201ENST00000316694 IGLV2-8P01709 118 aa17.86■□□□□ 0.45
SHMT1-201ENST00000316694 A0A1W2PRE2 83 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 ISLRO14498 428 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 CEACAM4O75871 244 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 CA1P00915 261 aaPredicted RBP17.85■□□□□ 0.45
SHMT1-201ENST00000316694 APOA2P02652 100 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 MT-ND6P03923 174 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 G0S2P27469 103 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 PPOXP50336 477 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 TDGF1P3P51864 188 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 KRTDAPP60985 99 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 TMEM183BQ1AE95 376 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 LINC00479Q96M42 142 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 VAMP8Q9BV40 100 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 RNF114Q9Y508 228 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 ATMQ13315 3056 aa17.85■□□□□ 0.45
SHMT1-201ENST00000316694 IGHV3-48P01763 117 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 CCL3L1P16619 93 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 BRS3P32247 399 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 SSBP2P81877 361 aaPredicted RBP17.84■□□□□ 0.45
SHMT1-201ENST00000316694 C1orf185Q5T7R7 199 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 IGF2BP2-AS1Q96M15 143 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 SLC25A2Q9BXI2 301 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 NAV3Q8IVL0 2385 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 E7EUB6 86 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 ATP5IP56385 69 aaPredicted RBP17.84■□□□□ 0.45
SHMT1-201ENST00000316694 RPL8P62917 257 aaKnown RBP17.84■□□□□ 0.45
SHMT1-201ENST00000316694 ERHP84090 104 aaKnown RBP17.84■□□□□ 0.45
SHMT1-201ENST00000316694 ZNF833PQ6ZTB9 187 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 PNKDQ8N490 385 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 OSR1Q8TAX0 266 aaPredicted RBP17.84■□□□□ 0.45
SHMT1-201ENST00000316694 FBXL7Q9UJT9 491 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 LINC00312Q9Y6C7 94 aa17.84■□□□□ 0.45
SHMT1-201ENST00000316694 DLL1O00548 723 aa17.83■□□□□ 0.45
SHMT1-201ENST00000316694 CD40P25942 277 aa17.83■□□□□ 0.45
SHMT1-201ENST00000316694 C3orf36Q3SXR2 165 aa17.83■□□□□ 0.45
SHMT1-201ENST00000316694 ZCCHC24Q8N2G6 241 aaKnown RBP17.83■□□□□ 0.45
SHMT1-201ENST00000316694 RCHY1Q96PM5 261 aa17.83■□□□□ 0.45
SHMT1-201ENST00000316694 NDUFA4L2Q9NRX3 87 aa17.83■□□□□ 0.45
SHMT1-201ENST00000316694 GPX1P07203 203 aa17.83■□□□□ 0.44
SHMT1-201ENST00000316694 TMEM30BQ3MIR4 351 aa17.83■□□□□ 0.44
SHMT1-201ENST00000316694 FAM167A-AS1Q96KT0 104 aa17.83■□□□□ 0.44
SHMT1-201ENST00000316694 C20orf144Q9BQM9 153 aa17.83■□□□□ 0.44
SHMT1-201ENST00000316694 GAL3ST2Q9H3Q3 398 aa17.83■□□□□ 0.44
SHMT1-201ENST00000316694 DNAJC4Q9NNZ3 241 aa17.83■□□□□ 0.44
SHMT1-201ENST00000316694 TBL2Q9Y4P3 447 aaKnown RBP17.83■□□□□ 0.44
SHMT1-201ENST00000316694 AMY1AP04745 511 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 PYYP10082 97 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 PMCHP20382 165 aa17.82■□□□□ 0.44
SHMT1-201ENST00000316694 SRIP30626 198 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms