RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 TMEM128Q5BJH2 165 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 TMEM268Q5VZI3 342 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 SLC25A24Q6NUK1 477 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 C19orf35Q6ZS72 473 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 TMED4Q7Z7H5 227 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 EEF1AKMT3Q96AZ1 226 aa11.56□□□□□ -0.56
UPF1-202ENST00000594243 F11RQ9Y624 299 aaKnown RBP11.56□□□□□ -0.56
UPF1-202ENST00000594243 TRBV7-1A0A0A6YYK4 115 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 IFNA17P01571 189 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 SRPXP78539 464 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 ERHP84090 104 aaKnown RBP11.55□□□□□ -0.56
UPF1-202ENST00000594243 EGFEM1PQ0D2K5 195 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 TMEM187Q14656 261 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 IZUMO4Q1ZYL8 232 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 RPEL1Q2QD12 228 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 LHFPL5Q8TAF8 219 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 S100ZQ8WXG8 99 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 ELOVL1Q9BW60 279 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 PLEKHA3Q9HB20 300 aa11.55□□□□□ -0.56
UPF1-202ENST00000594243 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.55□□□□□ -0.56
UPF1-202ENST00000594243 LINC00854A0A1B0GVQ3 168 aa11.54□□□□□ -0.56
UPF1-202ENST00000594243 ST8SIA3O43173 380 aa11.54□□□□□ -0.56
UPF1-202ENST00000594243 SUPT4H1P63272 117 aaKnown RBP11.54□□□□□ -0.56
UPF1-202ENST00000594243 KLF5Q13887 457 aaPredicted RBP11.54□□□□□ -0.56
UPF1-202ENST00000594243 ACSM6Q6P461 480 aa11.54□□□□□ -0.56
UPF1-202ENST00000594243 LGI3Q8N145 548 aa11.54□□□□□ -0.56
UPF1-202ENST00000594243 CENPSQ8N2Z9 138 aa11.54□□□□□ -0.56
UPF1-202ENST00000594243 OR2C3Q8N628 320 aa11.54□□□□□ -0.56
UPF1-202ENST00000594243 PTTG2Q9NZH5 202 aa11.54□□□□□ -0.56
UPF1-202ENST00000594243 CACFD1Q9UGQ2 172 aa11.54□□□□□ -0.56
UPF1-202ENST00000594243 PRKDCP78527 4128 aaKnown RBP11.54□□□□□ -0.56
UPF1-202ENST00000594243 A0A0B4J2A0 478 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 A0A0G2JRQ6 117 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 GGCTO75223 188 aaKnown RBP11.53□□□□□ -0.56
UPF1-202ENST00000594243 SAP30O75446 220 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 TRBV12-3P01733 135 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 CCR6P51684 374 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 Q6ZRM9 215 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 SLC35G3Q8N808 338 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 OR1P1Q8NH06 330 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 OR52E5Q8NH55 327 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 VN1R17PQ8TDU5 208 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 GPR146Q96CH1 333 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 OR4C12Q96R67 309 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 CCDC32Q9BV29 185 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 SHPKQ9UHJ6 478 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 DMRT1Q9Y5R6 373 aa11.53□□□□□ -0.56
UPF1-202ENST00000594243 TNCP24821 2201 aa11.52□□□□□ -0.56
UPF1-202ENST00000594243 INS-IGF2F8WCM5 200 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 NDUFB6O95139 128 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 VAMP1P23763 118 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 SNCAP37840 140 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 KRTAP10-11P60412 298 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 PDLIM3Q53GG5 364 aaPredicted RBP11.52□□□□□ -0.57
UPF1-202ENST00000594243 CLEC19AQ6UXS0 136 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 ZNF114Q8NC26 417 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 OR9G4Q8NGQ1 327 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 ENY2Q9NPA8 101 aa11.52□□□□□ -0.57
UPF1-202ENST00000594243 AURKAIP1Q9NWT8 199 aaPredicted RBP11.52□□□□□ -0.57
UPF1-202ENST00000594243 DUXBA0A1W2PPF3 345 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 BMPR1BO00238 502 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 IGHV3-23P01764 117 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 PRB2P02812 416 aaPredicted RBP11.51□□□□□ -0.57
UPF1-202ENST00000594243 CLEC3BP05452 202 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 ARL3P36405 182 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 SUB1P53999 127 aaKnown RBP eCLIP11.51□□□□□ -0.57
UPF1-202ENST00000594243 SYNJ2BPP57105 145 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 SPCS3P61009 180 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 UBE2MP61081 183 aaKnown RBP11.51□□□□□ -0.57
UPF1-202ENST00000594243 AARDQ4LEZ3 155 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 LYZL2Q7Z4W2 148 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 CCDC140Q96MF4 163 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 PRR13Q9NZ81 148 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 PEMTQ9UBM1 199 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 CACNG5Q9UF02 275 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 S4R3C0 116 aa11.51□□□□□ -0.57
UPF1-202ENST00000594243 MFSD2BA6NFX1 497 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 PPP5D1E7EU14 171 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 SFT2D2O95562 160 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 SULT1A3P0DMM9 295 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 SULT1A4P0DMN0 295 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 HOXA1P49639 335 aaPredicted RBP11.5□□□□□ -0.57
UPF1-202ENST00000594243 MFAP2P55001 183 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 SPINK9Q5DT21 86 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 GPHB5Q86YW7 130 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 LRTM2Q8N967 370 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 ZNF502Q8TBZ5 544 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 ATP6V0BQ99437 205 aa11.5□□□□□ -0.57
UPF1-202ENST00000594243 WDR12Q9GZL7 423 aaKnown RBP11.5□□□□□ -0.57
UPF1-202ENST00000594243 PLA2G10O15496 165 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 LYRM1O43325 122 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 OR2C1O95371 312 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 PPP1R1AQ13522 171 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 ZNF846Q147U1 533 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 FAM106AQ4KMX7 169 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 NMSQ5H8A3 153 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 PLET1Q6UQ28 207 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 SCARB1Q8WTV0 552 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 MISP3Q96FF7 219 aa11.49□□□□□ -0.57
UPF1-202ENST00000594243 GAR1Q9NY12 217 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms