RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 TMEM128Q5BJH2 165 aa17.46■□□□□ 0.39
SFSWAP-204ENST00000535399 RNASE11Q8TAA1 199 aaKnown RBP17.46■□□□□ 0.39
SFSWAP-204ENST00000535399 GPR146Q96CH1 333 aa17.46■□□□□ 0.39
SFSWAP-204ENST00000535399 F11RQ9Y624 299 aaKnown RBP17.46■□□□□ 0.39
SFSWAP-204ENST00000535399 PLA2G10O15496 165 aa17.45■□□□□ 0.38
SFSWAP-204ENST00000535399 WIPF1O43516 503 aa17.45■□□□□ 0.38
SFSWAP-204ENST00000535399 NDUFB6O95139 128 aa17.45■□□□□ 0.38
SFSWAP-204ENST00000535399 ZP3P21754 424 aa17.45■□□□□ 0.38
SFSWAP-204ENST00000535399 MECP2P51608 486 aaKnown RBP17.45■□□□□ 0.38
SFSWAP-204ENST00000535399 MFAP2P55001 183 aa17.45■□□□□ 0.38
SFSWAP-204ENST00000535399 S100ZQ8WXG8 99 aa17.45■□□□□ 0.38
SFSWAP-204ENST00000535399 CCDC32Q9BV29 185 aa17.45■□□□□ 0.38
SFSWAP-204ENST00000535399 CENPXA8MT69 81 aa17.44■□□□□ 0.38
SFSWAP-204ENST00000535399 SEC14L6B5MCN3 397 aa17.44■□□□□ 0.38
SFSWAP-204ENST00000535399 AARDQ4LEZ3 155 aa17.44■□□□□ 0.38
SFSWAP-204ENST00000535399 OR2C3Q8N628 320 aa17.44■□□□□ 0.38
SFSWAP-204ENST00000535399 SLC35G3Q8N808 338 aa17.44■□□□□ 0.38
SFSWAP-204ENST00000535399 MFSD2BA6NFX1 497 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 BMPR1BO00238 502 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 IGHV3-23P01764 117 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 ANXA3P12429 323 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 EGFEM1PQ0D2K5 195 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 KLF5Q13887 457 aaPredicted RBP17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 SPINK9Q5DT21 86 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 C9orf66Q5T8R8 295 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 LGI3Q8N145 548 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 CENPSQ8N2Z9 138 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 CCDC140Q96MF4 163 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 PLEKHA3Q9HB20 300 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 CACNG5Q9UF02 275 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 S4R3C0 116 aa17.43■□□□□ 0.38
SFSWAP-204ENST00000535399 CYB5BO43169 146 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 IFNA17P01571 189 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 PRB2P02812 416 aaPredicted RBP17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 KRTAP10-11P60412 298 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 SRPXP78539 464 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 PPP1R1AQ13522 171 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 FAM209BQ5JX69 171 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 SLC25A24Q6NUK1 477 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 EEF1AKMT3Q96AZ1 226 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 THYN1Q9P016 225 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 FLVCR2Q9UPI3 526 aa17.42■□□□□ 0.38
SFSWAP-204ENST00000535399 A0A0B4J2A0 478 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 INS-IGF2F8WCM5 200 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 SFT2D2O95562 160 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 VAMP1P23763 118 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 ANKRD55Q3KP44 614 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 NMSQ5H8A3 153 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 LYZL2Q7Z4W2 148 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 ZNF114Q8NC26 417 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 OR1P1Q8NH06 330 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 CXorf58Q96LI9 332 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 CTNNBIP1Q9NSA3 81 aaPredicted RBP17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 SHPKQ9UHJ6 478 aa17.41■□□□□ 0.38
SFSWAP-204ENST00000535399 LYRM1O43325 122 aa17.4■□□□□ 0.38
SFSWAP-204ENST00000535399 UBE2MP61081 183 aaKnown RBP17.4■□□□□ 0.38
SFSWAP-204ENST00000535399 ACSM6Q6P461 480 aa17.4■□□□□ 0.38
SFSWAP-204ENST00000535399 OR1L6Q8NGR2 347 aa17.4■□□□□ 0.38
SFSWAP-204ENST00000535399 ZNF502Q8TBZ5 544 aa17.4■□□□□ 0.38
SFSWAP-204ENST00000535399 PDCD10Q9BUL8 212 aa17.4■□□□□ 0.38
SFSWAP-204ENST00000535399 TRBV7-1A0A0A6YYK4 115 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 PPP5D1E7EU14 171 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 SYNJ2BPP57105 145 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 SPCS3P61009 180 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 ERHP84090 104 aaKnown RBP17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 RPEL1Q2QD12 228 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 CLEC19AQ6UXS0 136 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 LRTM2Q8N967 370 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 OR52E5Q8NH55 327 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 VN1R17PQ8TDU5 208 aa17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 WDR12Q9GZL7 423 aaKnown RBP17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 AURKAIP1Q9NWT8 199 aaPredicted RBP17.39■□□□□ 0.37
SFSWAP-204ENST00000535399 K7EIM0 57 aa17.38■□□□□ 0.37
SFSWAP-204ENST00000535399 ZNF846Q147U1 533 aa17.38■□□□□ 0.37
SFSWAP-204ENST00000535399 PDLIM3Q53GG5 364 aaPredicted RBP17.38■□□□□ 0.37
SFSWAP-204ENST00000535399 DUXBA0A1W2PPF3 345 aa17.37■□□□□ 0.37
SFSWAP-204ENST00000535399 GGCTO75223 188 aaKnown RBP17.37■□□□□ 0.37
SFSWAP-204ENST00000535399 SULT1A3P0DMM9 295 aa17.37■□□□□ 0.37
SFSWAP-204ENST00000535399 SULT1A4P0DMN0 295 aa17.37■□□□□ 0.37
SFSWAP-204ENST00000535399 HOXA1P49639 335 aaPredicted RBP17.37■□□□□ 0.37
SFSWAP-204ENST00000535399 INSL3P51460 131 aa17.37■□□□□ 0.37
SFSWAP-204ENST00000535399 PRKDCP78527 4128 aaKnown RBP17.37■□□□□ 0.37
SFSWAP-204ENST00000535399 IGHV3-21A0A0B4J1V1 117 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 PIGBOS1A0A0B4J2F0 54 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 C9orf170A2RU37 121 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 HLA-AP01891 365 aaKnown RBP17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 CLEC3BP05452 202 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 ANXA7P20073 488 aaKnown RBP17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 ARL3P36405 182 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 SMCO1Q147U7 214 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 IL34Q6ZMJ4 242 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 REC114Q7Z4M0 266 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 OR9G4Q8NGQ1 327 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 SCARB1Q8WTV0 552 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 TBC1D24Q9ULP9 559 aa17.36■□□□□ 0.37
SFSWAP-204ENST00000535399 SAP30O75446 220 aa17.35■□□□□ 0.37
SFSWAP-204ENST00000535399 OR2C1O95371 312 aa17.35■□□□□ 0.37
SFSWAP-204ENST00000535399 RNASE2P10153 161 aaKnown RBP17.35■□□□□ 0.37
SFSWAP-204ENST00000535399 TATDN3Q17R31 274 aa17.35■□□□□ 0.37
SFSWAP-204ENST00000535399 PVRIGQ6DKI7 326 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms